🚨 minor changes in metas

cnr-ibba · Dec 15, 2023 · abc517f · abc517f
1 parent 9628bce
commit abc517f
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Showing 3 changed files with 12 additions and 3 deletions.
diff --git a/modules/cnr-ibba/freebayes/chunk/meta.yml b/modules/cnr-ibba/freebayes/chunk/meta.yml
@@ -18,6 +18,11 @@ tools:
 
 input:
   - meta:
+      type: map
+      description: |
+        Groovy Map containing information on a region
+        e.g. [ id:'test', single_end:false ]
+  - sample_meta:
       type: map
       description: |
         Groovy Map containing sample information
@@ -60,7 +65,7 @@ output:
       type: file
       description: VCF indexed with tabix
       pattern: "*.{vcf.gz.tbi}"
-  - version:
+  - versions:
       type: file
       description: File containing software version
       pattern: "*.{version.txt}"

diff --git a/modules/cnr-ibba/freebayes/multi/meta.yml b/modules/cnr-ibba/freebayes/multi/meta.yml
@@ -53,7 +53,7 @@ output:
       type: file
       description: |
         VCF indexed with tabix (always all.fb.vcf.gz.tbi)
-  - version:
+  - versions:
       type: file
       description: File containing software version
       pattern: "*.{version.txt}"

diff --git a/modules/cnr-ibba/freebayes/single/meta.yml b/modules/cnr-ibba/freebayes/single/meta.yml
@@ -30,6 +30,10 @@ input:
       type: file
       description: Index for BAM file
       pattern: "*.{bai}"
+  - coverage:
+      type: file
+      description: Bamtools coverage output
+      pattern: "*.{txt}"
   - genome_fasta:
       type: file
       description: The genome fasta file (not compressed)
@@ -56,7 +60,7 @@ output:
       type: file
       description: VCF indexed with tabix
       pattern: "*.{vcf.gz.tbi}"
-  - version:
+  - versions:
       type: file
       description: File containing software version
       pattern: "*.{version.txt}"