Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

⬆️ update freebayes module #29

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

⬆️ update freebayes module #29

wants to merge 1 commit into from

Conversation

bunop
Copy link
Member

@bunop bunop commented Dec 18, 2023

PR checklist

Closes #28

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

@bunop bunop added bug Something isn't working dependencies Pull requests that update a dependency file labels Dec 18, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
bug Something isn't working dependencies Pull requests that update a dependency file
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

[FEATURE] update freebayes related modules
1 participant
@bunop