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versions bumped for new biocondutor: 3.11
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sk-sahu committed Jun 19, 2020
1 parent e669942 commit 4ba13d2
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4 changes: 2 additions & 2 deletions Dockerfile
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@@ -1,6 +1,6 @@
FROM rocker/shiny:3.6.1
FROM rocker/shiny:4.0.0
LABEL maintainer="Sangram Keshari Sahu <sangramsahu15@gmail.com>"
RUN apt-get update &&\
apt-get install libxml2-dev libssl-dev -y
RUN R -e 'install.packages(c("remotes","BiocManager"))' \
&& R -e 'BiocManager::install(version = "3.10")'
&& R -e 'BiocManager::install(version = "3.11")'
13 changes: 7 additions & 6 deletions README.md
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Expand Up @@ -16,15 +16,16 @@ Anyway this [codingene/bioshiner] made on top of [rocker/shiny] only and loosely
## Principles
* Image tags will represnt corresponding [Bioconductor relese versions]

For example to use `Bioconductor 3.10`
For example to use `Bioconductor 3.11`
```
docker pull codingene/bioshiner:3.10
docker pull codingene/bioshiner:3.11
```

## All Tags
| image | Bioc-Version |
|-------|------|
| codingene/bioshiner:3.10 | Bioconductor:3.10 |
| image | Bioc-Version | R-Version |
|-------|------|------|
| codingene/bioshiner:3.10 | Bioconductor:3.10 | R:3.6.1 |
| codingene/bioshiner:3.11 | Bioconductor:3.11 | R:4.0.0 |

## Test
Clone this repository containing test app
Expand All @@ -37,7 +38,7 @@ Run the app
docker run --rm -p 3838:3838 \
-v ${PWD}/BioShineR/test/apps/biocmanager:/srv/shiny-server/ \
-v /srv/shinylog/:/var/log/shiny-server/ \
codingene/bioshiner:3.10
codingene/bioshiner:3.11
```
Open the app in browser: http://localhost:3838/

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