Create Dockerfile

metadata/Dockerfile

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+FROM ghcr.io/compbiocore/bootcamp_scrna:latest
+
+
+#install some base libs
+RUN apt-get update && \
+	apt-get -y --no-install-recommends install --fix-missing \
+        apt-file \
+        apt-utils \
+        build-essential \
+        bzip2 \
+        ca-certificates \
+        cmake \
+        curl \
+	      default-jdk \
+        default-jre\
+        gdb \
+        git \
+        hdf5-helpers \
+        lbzip2 \
+        libbz2-dev \
+        libcairo2-dev \
+        libcurl4-openssl-dev \
+        libfftw3-dev \
+        libgeos-dev \
+        libgl1-mesa-dev \
+        libglpk-dev \
+        libglu1-mesa-dev \
+        libgsl0-dev \
+        libhdf4-alt-dev \
+        libhdf5-dev \
+        libjpeg-dev \
+        libjq-dev \
+        liblzma-dev \
+        libmariadbd-dev \
+        libnetcdf-dev \
+        libpng-dev \
+        libpq-dev \
+        libproj-dev \
+        libprotobuf-dev \
+        libsqlite3-dev \
+        libssh2-1-dev \
+        libssl-dev \
+        libudunits2-dev \
+        libxml2-dev \
+        libxt-dev \
+        libz-dev \
+        make \
+        netcdf-bin \
+        postgis \
+        protobuf-compiler \
+        python3-pip \
+        sqlite3 \
+        tk-dev \
+        unixodbc-dev \
+        unzip \
+        vim \
+        libpoppler-cpp-dev \
+        && apt-get clean && rm -rf /var/lib/apt/lists/*
+
+# FFTW, FIt-SNE
+RUN wget http://www.fftw.org/fftw-3.3.10.tar.gz \
+    && tar zxvf fftw-3.3.10.tar.gz \
+    && rm fftw-3.3.10.tar.gz \
+    && cd fftw-3.3.10 \
+    && ./configure \
+    && make \
+    && make install \
+    && git clone https://github.com/KlugerLab/FIt-SNE.git \
+    && cd FIt-SNE/ \
+    && g++ -std=c++11 -O3  src/sptree.cpp src/tsne.cpp src/nbodyfft.cpp  -o bin/fast_tsne -pthread -lfftw3 -lm \
+    && cp bin/fast_tsne /usr/local/bin/