Computational Metagenomics
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barelli_et_al_msystems_2020
barelli_et_al_msystems_2020 PublicMachine Learning scripts and data for Barelli et al. "The gut microbiota communities of wild arboreal and ground-feeding tropical primates are affected differently by habitat disturbance"
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phylorelief-paper
phylorelief-paper PublicScripts and data for "Explaining Diversity in Metagenomic Datasets by Phylogenetic-Based Feature Weighting"
Python
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- prok-classify Public
An updated version of the original pipeline metashot/prok-classify by davidealbanese, a workflow for assigning objective taxonomic classifications to bacterial and archaeal genomes, UPDATED to use GTDB-Tk 2.4.0 (2024 version) and the last release of the Genome Database Taxonomy GTDB (Release 220).
compmetagen/prok-classify’s past year of commit activity - barelli_et_al_scirep_2021 Public
Scripts and data for Barelli et al. "Interactions between parasitic helminths and gut microbiota in wild tropical primates from intact and fragmented habitats"
compmetagen/barelli_et_al_scirep_2021’s past year of commit activity - AIforEarth2020 Public
compmetagen/AIforEarth2020’s past year of commit activity - docker-rdpclassifier Public
compmetagen/docker-rdpclassifier’s past year of commit activity - barelli_et_al_msystems_2020 Public
Machine Learning scripts and data for Barelli et al. "The gut microbiota communities of wild arboreal and ground-feeding tropical primates are affected differently by habitat disturbance"
compmetagen/barelli_et_al_msystems_2020’s past year of commit activity - taxies Public
compmetagen/taxies’s past year of commit activity - docker-rstudio Public
compmetagen/docker-rstudio’s past year of commit activity
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