Code

Spectrum feature generator#178

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ArthurDeclercq wants to merge 32 commits intomaincompomics/ms2rescore:mainfrom spectrum-feature-generatorcompomics/ms2rescore:spectrum-feature-generatorCopy head branch name to clipboard

+476-15

Commits

Commits on Feb 24, 2024

• initial commit

  ArthurDeclercq

  committed
  fdceeba

Commits on Feb 25, 2024

• finalize ms2 feature generation

  ArthurDeclercq

  committed
  5374ed8

• add rustyms

  ArthurDeclercq

  committed
  60207a3

Commits on Feb 26, 2024

• remove exit statement fixed IM required value

  ArthurDeclercq

  committed
  ae39844

• change logger.info to debug

  ArthurDeclercq

  committed
  9b98c4d

• added profile decorator to get timings for functions

  ArthurDeclercq

  committed
  5e45756

• removed profile as standard rescore debug statement

  ArthurDeclercq

  committed
  304777c

• added new basic features

  ArthurDeclercq

  committed
  95ee475

• fixes for ms2 feature generator, removed multiprocessing

  ArthurDeclercq

  committed
  73f4573

Commits on Feb 28, 2024

• return empty list on parsing error with rustyms, removed multiprocessing

  ArthurDeclercq

  committed
  947233e

Commits on Mar 15, 2024

• add deeplc_calibration psm set

  ArthurDeclercq

  committed
  24ce565

Commits on Apr 17, 2024

• Merge branch 'timsRescore' of https://github.com/compomics/ms2rescore into spectrum-feature-generator

  ArthurDeclercq

  committed
  114b006

• remove unused import

  ArthurDeclercq

  committed
  33c38b0

Commits on Apr 19, 2024

• Merge branch 'timsRescore' of https://github.com/compomics/ms2rescore into spectrum-feature-generator

  ArthurDeclercq

  committed
  40425c7

• Merge branch 'timsRescore' of https://github.com/compomics/ms2rescore into spectrum-feature-generator

  ArthurDeclercq

  committed
  b810b8c

Commits on Aug 16, 2024

• Merge tag 'main' of https://github.com/compomics/ms2rescore into spectrum-feature-generator

  ArthurDeclercq

  committed
  69b5d1a

• Merge pull request #177 from compomics/main

  Show description for 6e2d102
  ArthurDeclercq

  authored
  6e2d102

Commits on Aug 21, 2024

• integrate mumble into ms2branch

  ArthurDeclercq

  committed
  11fdc51

Commits on Sep 23, 2024

• Merge remote-tracking branch 'origin/main' into spectrum-feature-generator

  ArthurDeclercq

  committed
  3140c44

Commits on Sep 27, 2024

• temp removal of sage features before rescoring

  ArthurDeclercq

  committed
  883169a

• Merge branch 'main' of https://github.com/compomics/ms2rescore into spectrum-feature-generator

  ArthurDeclercq

  committed
  97865e7

Commits on Nov 8, 2024

• remove psm_file features when rescoring with mumble

  ArthurDeclercq

  committed
  da39ae8

Commits on Nov 19, 2024

• linting

  SamvPy

  committed
  37fff28

• add hyperscore calculation

  SamvPy

  committed
  e8b59f3

Commits on Nov 21, 2024

• calibration fixes

  ArthurDeclercq

  committed
  c51cd34

• changes for mumble implementation

  ArthurDeclercq

  committed
  295e37f

Commits on Nov 22, 2024

• change openms peptide formatting

  SamvPy

  committed
  909860d

• add mumble psm filtering functionality

  ArthurDeclercq

  committed
  c5902c2

• Merge branch 'spectrum-feature-generator' of https://github.com/compomics/ms2rescore into spectrum-feature-generator

  ArthurDeclercq

  committed
  6eaceb2

• remove pyopenms dependency for hyperscore calculation

  SamvPy

  committed
  5ce55f5

• fix spectrum_id accession

  ArthurDeclercq

  committed
  986c5f6

• Merge branch 'spectrum-feature-generator' of https://github.com/compomics/ms2rescore into spectrum-feature-generator

  ArthurDeclercq

  committed
  bbecf6a