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remove splice site map generation during annotation
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pre-mRNA committed Apr 26, 2024
1 parent ecde0e0 commit 38c5dc6
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Showing 2 changed files with 6 additions and 0 deletions.
1 change: 1 addition & 0 deletions manuscript_demo/benchmark.sh
Original file line number Diff line number Diff line change
Expand Up @@ -219,6 +219,7 @@ cargo test test_print_all_transcript_info -- --nocapture

# compile from source and run liftover
cd ~/R2Dtool
cargo test -- --nocapture
cargo build --release
export PATH="$PATH:$(pwd)/target/release/"

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5 changes: 5 additions & 0 deletions src/annotate.rs
Original file line number Diff line number Diff line change
Expand Up @@ -241,6 +241,11 @@ pub fn run_annotate(matches: &clap::ArgMatches, has_header: bool) -> Result<(),
}
}
}
let file_path = "splice_sites_map.txt";
if let Err(e) = fs::remove_file(file_path) {
eprintln!("Failed to delete file '{}': {:?}", file_path, e);
}

Ok(())
}

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