github workflow fixes

computational-metabolomics · Jun 12, 2024 · 7baced6 · 7baced6
1 parent 505e2cd
commit 7baced6
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -40,6 +40,7 @@ jobs:
     - name: Install Planemo
       run: pip install planemo
     - name: Fake a planemo run to update cache
+      continue-on-error: true
       run: |
         touch tool.xml
         PIP_QUIET=2 planemo test --galaxy_python_version ${{ matrix.python-version }} --no_conda_auto_init --galaxy_branch $GALAXY_RELEASE

diff --git a/.github/workflows/pr.yaml b/.github/workflows/pr.yaml
@@ -187,7 +187,7 @@ jobs:
       with:
         name: Workflow artifacts
         path: ../workflow_artifacts/
-    - uses: r-lib/actions/setup-r@master
+    - uses: r-lib/actions/setup-r@main
       with:
         r-version: ${{ matrix.r-version }}
     - name: Cache R packages
@@ -340,7 +340,7 @@ jobs:
     needs: test
     strategy:
       matrix:
-        python-version: [3.7]
+        python-version: [3.11]
     # This job runs on Linux
     runs-on: ubuntu-latest
     steps:
@@ -387,7 +387,7 @@ jobs:
     needs: [lint,flake8,lintr,combine_outputs]
     strategy:
       matrix:
-        python-version: [3.7]
+        python-version: [3.11]
     runs-on: ubuntu-latest
     if: github.ref == 'refs/heads/master' && github.repository_owner == 'computational-metabolomics'
     steps: