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@cortes-ciriano-lab

Cortes-Ciriano lab (EMBL-EBI)

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  1. SComatic SComatic Public

    A tool for detecting somatic variants in single cell data

    Python 169 27

  2. savana savana Public

    Somatic structural variant caller for long-read data

    Python 47 2

  3. ReConPlot ReConPlot Public

    HTML 21 2

  4. telomere_fusions telomere_fusions Public

    Code to call telomere fusions using DNA sequencing data

    R 4

  5. TelFusDetector TelFusDetector Public

    Python 2 1

  6. ClonalSim ClonalSim Public

    Python 1

Repositories

Showing 10 of 13 repositories
  • DeMethify Public

    DeMethify is a partial-reference based methylation deconvolution algorithm that uses a weighted constrained version of an iteratively optimized negative matrix factorization algorithm.

    cortes-ciriano-lab/DeMethify’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 7, 2024
  • savana Public

    Somatic structural variant caller for long-read data

    cortes-ciriano-lab/savana’s past year of commit activity
    Python 47 Apache-2.0 2 4 1 Updated Nov 6, 2024
  • ReConPlot Public
    cortes-ciriano-lab/ReConPlot’s past year of commit activity
    HTML 21 GPL-3.0 2 1 0 Updated Nov 4, 2024
  • ClonalSim Public
    cortes-ciriano-lab/ClonalSim’s past year of commit activity
    Python 1 0 0 0 Updated Oct 12, 2024
  • SComatic Public

    A tool for detecting somatic variants in single cell data

    cortes-ciriano-lab/SComatic’s past year of commit activity
    Python 169 27 22 4 Updated Sep 15, 2024
  • lta-analysis Public
    cortes-ciriano-lab/lta-analysis’s past year of commit activity
    R 0 0 0 0 Updated Jul 28, 2024
  • ont_fb-inv_artefacts Public

    Method to estimate the rate of fold-back inversion artefacts in ONT sequencing data

    cortes-ciriano-lab/ont_fb-inv_artefacts’s past year of commit activity
    Python 0 0 0 0 Updated Jun 17, 2024
  • osteosarcoma_evolution Public

    Code for the analysis of the mechanisms underpinning osteosarcoma genome complexity and evolution

    cortes-ciriano-lab/osteosarcoma_evolution’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 13, 2023
  • TelFusDetector Public
    cortes-ciriano-lab/TelFusDetector’s past year of commit activity
    Python 2 1 0 0 Updated Sep 27, 2023
  • telomere_fusions Public

    Code to call telomere fusions using DNA sequencing data

    cortes-ciriano-lab/telomere_fusions’s past year of commit activity
    R 4 0 0 0 Updated Aug 11, 2023
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