constellations release v0.1.2

Update to ensure that more lower quality samples that could be classified as sublineages BA.* get a "Probable Omicron (BA.*-like)" call instead of a parent call. Make the parent "Omicron (Unclassified)" and remove mrca_lineage field from it so that pangolin does not call lineage B.1.1.529 (there are no designated sequences)

constellations release v0.1.1

Update to allow for primer dropout without Probable label

constellations release v0.1.0

Adds definition for BA.3 and probable B.1.1.529 (instead of only probable BA.1)
This release requires an update to scorpio (v0.3.16) to handle alternative sets of rules within a constellation file.

This change is required to be able to allow a probable Omicron (B.1.1.529) to exist as well as its 3 sublineages.
It remains necessary to have a probable definition while global bioinformatics pipelines continue to call for reference in low quality regions, and now there are 3 sublineages the probable definition should not only apply to BA.1.

constellations release v0.0.30

Merge pull request #49 from cov-lineages/dev

resolve #48

constellations release v0.0.29

• Lower min_alt threshold to allow for BA.2 sequences with a few more ambiguities
• Revert comments in constellations pending a major release

constellations release v0.0.28

• Add constellations splitting B.1.1.529 to the to sublineages BA.1 and BA.2
• Update Probable Omicron definition to be probable BA.1
• Label B.1.1.529 as possible omicron for now

constellations release v0.0.27

Update omicron definition based on review of more sequences
Expand number of refs in probable omicron definition to cover the newly identified outgroup

constellations release v0.0.26

Split epsilon into 2 files
Remove probable from mrca_lineage field in scorpio for probable omicron

constellations release v0.0.25

Add a definition to catch probably omicron which have low quality sequence/ref calls

constellations release v0.0.24

Add WHO label Omicron to B.1.1.529