remove digitals after decimal in ensembl_id #157
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name: scflow | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: [3.7, 3.8] | |
name: Python ${{ matrix.python-version }} | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Setup python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install pep8 flake8 pytest nose cgatcore PyYAML gevent ruffus paramiko sqlalchemy pandas pysam apsw | |
- name: Lint with flake8 | |
run: | | |
# stop the build if there are Python syntax errors or undefined names | |
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Test with pytest | |
run: | | |
python setup.py install | |
pycodestyle --ignore=E501 tests | |
nosetests -v tests/test_import.py | |
nosetests -v tests/test_style.py | |
nosetests -v tests/test_pipeline_control.py |