Containing code for splitting out concatenated fastq files
The preferred method for installation is through conda/mamba. Preferably the installation should be in a seperate environment::
mamba env create -f conda/environments/split_fastqcats.yml
conda activate fastcats
pip install -e .
split_fastqcats --help
Run the split_fastqcats --help command view the help documentation.
Then run the pipeline::
split_fastqcats split tests/input.fastq.gz output.fastq.gz