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  1. C.albicans-ml-pipeline C.albicans-ml-pipeline Public

    Pipeline of building a machine learning model to identify C. albicans gene essentiality

    Python 3

  2. BridGE-Python BridGE-Python Public

    BridGE: a pathway-based analysis tool for detecting genetic interactions from GWAS

    Python 3

  3. barseq_counter barseq_counter Public

    A simple tool for demultiplexing barcode sequencing experiments.

    Python 2 1

  4. BEAN-counter BEAN-counter Public

    Python 1 2

  5. CG-TARGET CG-TARGET Public

    R 1 5

  6. SGA_Public SGA_Public Public

    Compute genetic interactions from SGA output of colony sizes in yeast.

    MATLAB 1

Repositories

Showing 10 of 20 repositories
  • C.albicans_in_vitro_pipeline Public

    Functional genomic analysis of genes important for Candida albicans fitness in diverse environmental conditions

    csbio/C.albicans_in_vitro_pipeline’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 22, 2024
  • C.albicansDataHub Public Forked from peterwang0209/C.albicansDataHub
    csbio/C.albicansDataHub’s past year of commit activity
    Mathematica 0 1 0 0 Updated Jun 23, 2024
  • BridGE-Python Public

    BridGE: a pathway-based analysis tool for detecting genetic interactions from GWAS

    csbio/BridGE-Python’s past year of commit activity
    Python 3 0 0 0 Updated Jun 24, 2023
  • CSBIO-Website Public Forked from MeeshCompBio/CSBIO-Website
    csbio/CSBIO-Website’s past year of commit activity
    HTML 1 1 0 0 Updated Aug 24, 2022
  • BEAN-counter Public
    csbio/BEAN-counter’s past year of commit activity
    Python 1 2 3 0 Updated Aug 11, 2022
  • ae-norm Public

    Autoencoder normalization of the DepMap

    csbio/ae-norm’s past year of commit activity
    R 1 0 0 0 Updated May 11, 2022
  • BridGE Public Forked from wangx677/BridGE
    csbio/BridGE’s past year of commit activity
    MATLAB 0 1 0 0 Updated Apr 20, 2022
  • C.albicans-ml-pipeline Public

    Pipeline of building a machine learning model to identify C. albicans gene essentiality

    csbio/C.albicans-ml-pipeline’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Oct 13, 2021
  • CG-TARGET Public
    csbio/CG-TARGET’s past year of commit activity
    R 1 5 0 3 Updated Oct 5, 2021
  • VS-SVM Public

    Improving Measures of Chemical Structural Similarity Using Machine Learning on Chemical-Genetic Interactions

    csbio/VS-SVM’s past year of commit activity
    MATLAB 1 0 0 0 Updated Aug 9, 2021
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