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csoderlund edited this page Oct 7, 2025 · 1 revision

TCW (Transcriptome computational workbench)

Description: For single-species (singleTCW) - similarity search against annotation databases, GO annotation, ORF finding and differential analysis. For multi-species (multiTCW) - compute similar pairs, provide statistics for pairs, compute clusters, provide statistics for clusters. Both singleTCW and multiTCW provide graphical interfaces for extensive query and display of the results.

Download TCW tarball: https://github.com/csoderlund/TCW/releases. The TCW tarball contains the executable jar files, external software and demo files.

Requirements: Java and MySQL to build the database and view the results. R for differential analysis. All other external software used by TCW is contained in the package tar file. TCW has been tested on Linux and MacOS.

To use:

  1. Download the latest TCW tarball.
  2. Put the tarball in the location you want the TCW_4 directory and untar it (tar xf TCW_4.tar.gz).
  3. Follow the instructions in https://csoderlund.github.io/TCW/stcw/UserGuide.html#demo to try the demo.

Full Documentation: https://csoderlund.github.io/TCW

TCW github code: To build, see TCW/java/README.

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