This repository contains the code for the Differential Causal Inference (DCI) algorithm.

The arXiv preprint is available at [https://arxiv.org/abs/1802.05631]

Authors: Yuhao Wang, Chandler Squires, Anastasiya Belyaeva, and Caroline Uhler.

This project uses Python 3.6.4 and R 3.5.0

To get started, download, unzip, and run:

• bash make_venv.sh
• R -f install_packages.R

To recreate the figures, run

• source venv/bin/activate
• bash create_fig1ab_data.sh
• python3 create_fig1c_data.py
• bash create_fig2_data.sh
• ipython3 kernel install --user --name=dci
• jupyter-notebook

Then run the notebooks figure1ab.ipynb, figure1c.ipynb, and figure2.ipynb