Ask screed to parse descriptions #11
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The make-namedb.py script was not asking screed to parse descriptions, the resulting namedb file had empty descriptions for all transcripts.
It seems record names in screed changed format. In order for annotate-seqs.py to work with make-namedb.py I had to change how transcript names are parsed.
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The annotating transcript families in the eel pond mRNASeq protocol was failing, even when using the canned results. It seems transcript names are stored differently than the scripts expect. @josefinacmenendez and I spent some time tracking down some of the changes. |
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The make-namedb.py script was not asking screed to parse descriptions,
the resulting namedb files had empty descriptions for all transcripts.