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Check if downloaded file is empty #385

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Check if downloaded file is empty #385

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Check if downloaded file is empty
shntnu Mar 29, 2024
5679991
pathlib
shntnu Mar 29, 2024
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9 changes: 8 additions & 1 deletion pycytominer/cyto_utils/cell_locations.py
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Original file line number Diff line number Diff line change
Expand Up @@ -175,7 +175,14 @@ def _download_s3(self, uri: str):

self.s3.download_file(bucket, key, tmp_file.name)

return tmp_file.name
# Check if the downloaded file exists and has a size greater than 0
tmp_file_path = pathlib.Path(tmp_file.name)
if tmp_file_path.exists() and tmp_file_path.stat().st_size > 0:
return tmp_file.name
else:
raise ValueError(
f"Downloaded file '{tmp_file.name}' is empty or does not exist."
)

def _load_metadata(self):
"""Load the metadata into a Pandas DataFrame
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