adding lib imports

cazy_little_helper/create_model.py

@@ -7,8 +7,8 @@
 @author: dabane-ghassan
 """
 from __future__ import absolute_import
-from parsers import Parser
-from model import Model
+from cazy_little_helper.parsers import Parser
+from cazy_little_helper.model import Model
 
 def launch_create_model( 
     path: str,

cazy_little_helper/find_ids.py

@@ -6,8 +6,8 @@
 @author: dabane-ghassan
 """
 from __future__ import absolute_import
-from parsers import Parser
-from toolkit import Toolkit
+from cazy_little_helper.parsers import Parser
+from cazy_little_helper.toolkit import Toolkit
 
 def launch_find( 
     ids_file: str,

cazy_little_helper/model.py

@@ -18,8 +18,8 @@
 from sklearn.calibration import CalibratedClassifierCV
 from sklearn.utils import shuffle
 from joblib import dump
-from preprocessor import Preprocessor
-from scraper import Scraper
+from cazy_little_helper.preprocessor import Preprocessor
+from cazy_little_helper.scraper import Scraper
 
 class Model:
     """A class to represent the architecture of CAZy's little helper,

cazy_little_helper/pipeline.py

@@ -10,10 +10,10 @@
 import numpy as np
 import pandas as pd
 from metapub.pubmedcentral import get_pmcid_for_otherid
-from scraper import Scraper
-from preprocessor import Preprocessor
-from scorer import Scorer
-from toolkit import Toolkit
+from cazy_little_helper.scraper import Scraper
+from cazy_little_helper.preprocessor import Preprocessor
+from cazy_little_helper.scorer import Scorer
+from cazy_little_helper.toolkit import Toolkit
 
 class Pipeline:
     """A prediction pipeline class.

cazy_little_helper/predict.py

@@ -7,8 +7,8 @@
 @author: dabane-ghassan
 """
 from __future__ import absolute_import
-from parsers import Parser
-from pipeline import Pipeline
+from cazy_little_helper.parsers import Parser
+from cazy_little_helper.pipeline import Pipeline
 
 def launch_pipeline( 
     input_data: str,

setup.py

@@ -5,14 +5,14 @@
 
 setuptools.setup(
     name='cazy-little-helper',
-    version='0.1',
+    version='1.0',
     description='A biocuration assistant for the CAZy database.',
     long_description=long_description,
     long_description_content_type="text/markdown",
     url='https://github.com/dabane-ghassan/cazy-little-helper',
     author='dabane-ghassan',
     author_email = 'dabane.ghassan@gmail.com',
-    #download_url = 'https://github.com/dabane-ghassan/dnazip/archive/v0.2.tar.gz',
+    download_url = 'https://github.com/dabane-ghassan/cazy-little-helper/archive/refs/tags/v1.0.tar.gz',
     license='MIT',
     packages=setuptools.find_packages(include=['cazy-little-helper', 'cazy-little-helper.*']),
     classifiers=[
@@ -30,10 +30,12 @@
             'mock >= 4.0.0',
         ]
     },
-    #entry_points={
-    #    'gui_scripts': [
-    #        'dnazip=dnazip.main:main'
-    #    ]
-    #},
+    entry_points={
+        'console_scripts': [
+            'predict=cazy_little_helper.predict:main',
+            'create=cazy_little_helper.create_model:main',
+            'find=cazy_little_helper.find_ids:main',
+        ]
+    },
     python_requires='>=3.6',
 )