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Damianos P. Melidis edited this page Nov 21, 2021 · 1 revision

Installation Guide

Python Environment
Open Data

GenOtoScope Wiki Home

Toggle table of contents Pages 20

Home
Clinical significant exons
ClinVar data
Critical regions
Download Code Repository
GenOtoScope Wiki Home
gnomAD data
HGNC data
HL relevant transcripts
How to download open data & update annotation files
How to run genotoscope_annotate.py
How to run genotoscope_classify.py
Installation Guide
Organizing folders
Python Environment
Running CLI
Toy dataset
UniProt data
Using the Web Interface
Wiki sidebar

Installation Guide:

Code Repository
Python Environment
Organize folders before run

How to run CLI:

genotoscope_annotate
genotoscope_classify

How to run the web interface

How to download open data & update annotation files:

Open data:

ClinVar
gnomAD
UniProt

Annotations data:

HGNC
Critical regions
Clinical significant exons
HL-relevant transcripts

Explain input & output for example variants

Clone this wiki locally

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