-
Notifications
You must be signed in to change notification settings - Fork 16
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #97 from catalystneuro/001084/demo
Add tutorial notebook for `001084`
- Loading branch information
Showing
3 changed files
with
2,340 additions
and
0 deletions.
There are no files selected for viewing
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,24 @@ | ||
# Targeted micro-fiber arrays for measuring and manipulating localized multi-scale neural dynamics over large, deep brain volumes during behavior tutorial | ||
|
||
This example notebook demonstrates how to access the dataset published at [DANDI:001084](https://dandiarchive.org/dandiset/001084/draft). | ||
|
||
This dataset contains fiber photometry recordings from multi-fiber arrays implanted in the striatum in mice running on | ||
a treadmill while receiving either visual (blue LED) or auditory (12 kHz tone) stimuli at random intervals (4–40 s). | ||
Some sessions may include water reward delivery, where a water spout mounted on a post delivered water rewards (9 μL) | ||
at random time intervals (randomly drawn from a 5-30s uniform distribution) through a water spout and solenoid valve | ||
gated electronically. Licking was monitored by a capacitive touch circuit connected to the spout. | ||
|
||
## Installing the dependencies | ||
|
||
```bash | ||
git clone https://github.com/dandi/example-notebooks | ||
cd example-notebooks/001084/HoweLab | ||
conda env create --file environment.yml | ||
conda activate howelab_001084_demo | ||
``` | ||
|
||
## Running the notebook | ||
|
||
```bash | ||
jupyter notebook 001084_demo.ipynb | ||
``` |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,13 @@ | ||
name: howelab_001084_demo | ||
channels: | ||
- conda-forge | ||
dependencies: | ||
- python==3.11 | ||
- ipywidgets | ||
- pip | ||
- pip: | ||
- dandi | ||
- jupyter | ||
- matplotlib | ||
- pynwb | ||
- remfile |