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New York
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New York
4 followers · 22 following
  • New York, USA

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danimelsz/README.md

Welcome to my repositories

About me

  • Name: Daniel Y M Nakamura

  • Education: Biologist (University of São Paulo, 2017–2021) and data scientist.

  • Current position: PhD Student in Bioinformatics at University of São Paulo

  • Skills: Python, R, Bash using phylogenetic methods (ape, phytools, TNT, POY, IQ-Tree, RaxMl), network analyses (igraph and bipartite), statistical models (LMs, GLMs, LMMs, GLMMs, Bayesian Models), and Machine Learning (caret, scikit-learn, TensorFlow)

  • E-mail: dani_ymn@usp.br

  • Pronouns: he/him

Popular repositories Loading

  1. danimelsz danimelsz Public

    Jupyter Notebook

  2. EqualLength EqualLength Public

    Testing the impact of treating equal length sequences statically (i.e. prealigned) and dynamically (i.e. non-aligned and thus prone to be directly optimized) in parsimony analyses using POY.

    R

  3. hDNA_Dendropsophus hDNA_Dendropsophus Public

  4. RNODE RNODE Public

    R

  5. PrepDyn PrepDyn Public

    A collection of Python scripts to facilitate the preprocessing of input sequences to dynamic homology.

    Python