Merge pull request #11 from databio/endpoints_examples

Endpoints examples

bbconf/_version.py

@@ -1 +1 @@
-__version__ = "0.1.0"
+__version__ = "0.1.1"

bbconf/schemas/bedfiles_schema.yaml

@@ -6,9 +6,11 @@ md5sum:
   description: BED file checksum
 bedfile:
   type: file
+  label: bed
   description: BED file
 bigbedfile:
   type: file
+  label: bigBed
   description: bigBed file
 regions_no:
   type: integer
@@ -66,30 +68,39 @@ promotercore_percentage:
   description: Promoter core percentage
 tssdist:
   type: image
+  label: TSS_distance
   description: Region-TSS distance plot
 chrombins:
   type: image
+  label: Chromosome_bins
   description: Regions distribution over chromosomes plot
 gccontent:
   type: image
+  label: GC_content
   description: GC content plot
 paritions:
   type: image
+  label: Regions_dist_partitions
   description: Regions distribution over genomic partitions plot
 expected_partitions:
   type: image
+  label: Expected_partitions
   description: Expected distribution over genomic partitions plot
 cumulative_partitions:
   type: image
+  label: Cumulative_partitions
   description: Cumulative distribution over genomic partitions plot
 widths_histogram:
   type: image
+  label: Widths_histogram 
   description: Quantile-trimmed histogram of widths
 neighbor_distances:
   type: image
+  label: Neighbor_distance
   description: Distance between neighbor regions
 open_chromatin:
   type: image
+  label: Open_chromatin
   description: Cell specific enrichment for open chromatin plot
 other:
   type: object

bbconf/schemas/bedsets_schema.yaml

@@ -6,24 +6,28 @@ md5sum:
   description: BED set checksum
 bedset_tar_archive_path:
   type: file
-  label: BED set archive
+  label: BED_set_archive
   description: Relative path to the TAR archive with BED files in this BED set
 bedset_igd_database_path:
   type: file
-  label: BED set iGD database
+  label: iGD_database
   description: Relative path to the iGD database
 bedset_pep:
   type: file
-  label: BED set PEP
+  label: PEP
   description: Relative path to PEP
 bedset_bedfiles_gd_stats:
-  type: object
-  label: BED files statistics
+  type: file
+  label: BED_statistics
   description: Statistics of BED files in this BED set
 bedset_gd_stats:
-  type: object
-  label: BED set statistics
+  type: file
+  label: BED_set_statistics
   description: BED set statistics
+hubfile_path:
+  type: file
+  label: Hub_file
+  description: Path to the hub.txt files for the BED set
 bedset_means:
   type: object
   description: Mean statistics of the BED files in this BED set
@@ -32,11 +36,8 @@ bedset_standard_deviation:
   description: Standard deviations of statistics of the BED files in this BED set
 region_commonality:
   type: image
+  label: Region_commonality
   description: Region commonality plot
-hubfile_path:
-  type: file
-  label: BED set hub file
-  description: Path to the hub.txt files for the BED set
 genome:
   type: string
   description: genome assembly of the BED set

docs/changelog.md

@@ -2,6 +2,10 @@
 
 This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html) and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) format.
 
+## [0.1.1] - 2021-04-15
+### added
+- added new fields in the bedfiles and bedsets schema
+
 ## [0.1.0] - 2021-02-22
 **This release introduces backwards incompatible changes**
 ### Changed 
@@ -23,4 +27,4 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 
 ## [0.0.1] - 2020-02-05
 ### Added 
-- initial project release
+- initial project release