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khoroshevskyi committed Dec 3, 2024
1 parent 4ca2adf commit 590ee70
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Showing 3 changed files with 4 additions and 2 deletions.
3 changes: 2 additions & 1 deletion bbconf/bbagent.py
Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,7 @@

_LOGGER = logging.getLogger(PKG_NAME)


class BedBaseAgent(object):
def __init__(
self,
Expand Down Expand Up @@ -53,7 +54,7 @@ def __repr__(self) -> str:
repr += f"\n{self.bed}"
repr += f"\n{self.bedset}"
repr += f"\n{self.objects}"
return repr
return repr

def get_stats(self) -> StatsReturn:
"""
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1 change: 1 addition & 0 deletions bbconf/config_parser/bedbaseconfig.py
Original file line number Diff line number Diff line change
Expand Up @@ -45,6 +45,7 @@ class BedBaseConfig(object):
"""
Class to handle BEDbase configuration file and create objects for different modules.
"""

def __init__(self, config: Union[Path, str], init_search_interfaces: bool = True):
_LOGGER.info(f"Loading configuration file: {config}")
self.cfg_path = get_bedbase_cfg(config)
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2 changes: 1 addition & 1 deletion requirements/requirements-all.txt
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
yacman >= 0.9.1
sqlalchemy >= 2.0.0
geniml[ml] >= 0.5.1
geniml[ml] >= 0.5.2
psycopg >= 3.1.15
colorlogs
pydantic >= 2.9.0
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