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Release 0.5.0#88

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Merged

khoroshevskyi merged 55 commits intomaindatabio/bedboss:mainfrom

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Jan 17, 2025

Commits

Commits on Oct 25, 2024

• updated regions number

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  55680c2

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• added qdrant label colection uploader

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Commits on Oct 28, 2024

• removed one plot from stats and updated tss dist

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Commits on Oct 29, 2024

• added gc content and isort

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  4bfef80

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• added skipper to run-pep

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• few tweaks

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Commits on Oct 30, 2024

• added bedset annotation from pep

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  ad4d6e4

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• updated bbconf requirements

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  272f17a

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• added reference genome predictor

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  4b5ceaf

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Commits on Nov 1, 2024

• some more improvements on skipper

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  2fff1b4

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• updated version

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  37e863e

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• for debugging

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  dc86e56

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• for debugging2

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Commits on Nov 3, 2024

• updated cli, requirements and R script

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Commits on Nov 4, 2024

• remove debugger lines

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  7080c2d

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• Work on new reindexing

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  ac7877f

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Commits on Nov 5, 2024

• fixed r stats bug, and improved genome predictor

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  76ecb0e

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Commits on Nov 7, 2024

• fix of not recreation of bedset in geo uploader

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  f76b179

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• fixed bedqc messaging error

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  86ba98b

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• added mouse standard genome name

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  c0a54f5

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Commits on Nov 19, 2024

• Work on bbuploader:

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• increased length of genome standardization, updated bbuploader cli

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  6f69bdf

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Commits on Nov 25, 2024

• optimization of bbuploader

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Commits on Dec 9, 2024

• work on partial processing and lint

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  809bca7

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• Added cli light

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  1d57cfb

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• strict versions

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  15821dd

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• added light mode to bedmaker

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Commits on Dec 16, 2024

• Added light mode to bedbuncher and cli

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Commits on Dec 18, 2024

• Added run unprocessed files

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• added reprocess functions for bed and bedsets and cli options

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  5ce2d6d

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• Merge pull request #85 from databio/speed_improvements

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Commits on Dec 19, 2024

• changed light -> lite

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  a4f4cea

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• Merge pull request #87 from databio/partial_processing

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Commits on Jan 6, 2025

• updated requirements

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  fa4f5fe

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• updated version

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  63e6129

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• updated tests

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• updated python version in test

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  6710811

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• updated python version in test - reverting

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  bfa1c42

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• error fix

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  7447966

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• updated bedmaker logger

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Commits on Jan 7, 2025

• updated search limit

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  8b67bd4

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• updated docstring in cli

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  8230cec

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• added logging provided parameters

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  f3e9856

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• updated logger in bedmaker

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  1a49462

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• updated exceptions in geo uploader

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  7414e1e

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• updated reprocessing of the files

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  db77732

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• lint

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  36927d1

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Commits on Jan 8, 2025

• updated geo bed file uploader

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  a52a57f

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Commits on Jan 13, 2025

• fixed #81

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Commits on Jan 14, 2025

• updated docs

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• updated requirements

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  fc9152e

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Commits on Jan 16, 2025

• fixed #23

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• Release updates

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• Release updates

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  de9cc36

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• deleted unused code

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