0.2.0 Release - Gibson Les Paul

[donaldcampbelljr]

[0.2.0]

• add position shift workflow for bam to bw (was previously added for bam to bed)
• add scaling argument for bam to bw workflow #53
• fix accumulation issue for bam workflow #56
• fix wiggle file (core) beginning at 0 #43
• fix npy file (end) using start instead of end #61
• force zoom to 1 for bed/narrowPeak to bw #34
• fix IGD overlap issue #45
• add ga4gh refget digest functionality #58

TODO:

• Resolve issue with npy files: uniwig output inconsistency: npy and wig #64
• update changelog: https://github.com/databio/bedbase/blob/master/docs/gtars/changelog.md

[codecov]

Codecov Report

Attention: Patch coverage is 78.53577% with 129 lines in your changes missing coverage. Please review.

Project coverage is 61.27%. Comparing base (bfcabdc) to head (df443c2).
Report is 68 commits behind head on master.

Files with missing lines	Patch %	Lines
gtars/src/uniwig/mod.rs	66.51%	73 Missing ⚠️
gtars/src/uniwig/counting.rs	90.04%	20 Missing ⚠️
gtars/src/uniwig/cli.rs	0.00%	18 Missing ⚠️
gtars/src/igd/search.rs	84.48%	9 Missing ⚠️
gtars/src/common/utils.rs	14.28%	6 Missing ⚠️
gtars/src/scoring/cli.rs	0.00%	2 Missing ⚠️
gtars/src/igd/create.rs	90.90%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##           master      #51      +/-   ##
==========================================
- Coverage   64.47%   61.27%   -3.21%     
==========================================
  Files          36       37       +1     
  Lines        5754     6102     +348     
==========================================
+ Hits         3710     3739      +29     
- Misses       2044     2363     +319     

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[donaldcampbelljr]

Still failing checks due to Warning:
Warning: No rustc version reported prior to compilation

[donaldcampbelljr]

- [ ] add workflow to uplaod gtars to bioconda

we will add bioconda after release