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add updates
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jpsmith5 committed Jul 10, 2019
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# Change log
All notable changes to this project will be documented in this file.

## [0.8.0] -- 2019-07-10

### Changed
- Update pause index calculation and required annotation files
- Update mRNA contamination required annotation files
- Move fastq processing to separate function
- Change handling of PE data
- Update TSS profiling

### Added
- Add modified fastq_pair tool to handle PE data properly
- Add pause index plotting
- Add mRNA contamination calculation and plotting
- Add fragment length distribution plotting for PE data

## [0.7.3] -- 2019-06-13

### Changed
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