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@datajoint

DataJoint

Open-source tools for computational data pipelines.

Welcome to DataJoint!

DataJoint for Python is an open-source framework for scientific data pipelines based on the relational data model. DataJoint prescribes a consistent method for organizing, populating, computing, and querying data.

In this GitHub Organization, you will find the source code for DataJoint, as well as tutorials and example pipelines.

Data Pipeline Example

pipeline

Yatsenko et al., bioRxiv 2021

Getting Started

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  1. datajoint-python datajoint-python Public

    Relational data pipelines for the science lab

    Python 173 85

  2. datajoint-tutorials datajoint-tutorials Public

    Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

    Jupyter Notebook 10 131

  3. element-array-ephys element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    Python 5 35

  4. element-calcium-imaging element-calcium-imaging Public

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

    Jupyter Notebook 9 43

Repositories

Showing 10 of 90 repositories
  • element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    datajoint/element-array-ephys’s past year of commit activity
    Python 5 MIT 35 26 (2 issues need help) 0 Updated Feb 14, 2025
  • element-zstack Public

    DataJoint Element for volumetric data analysis using Cellpose

    datajoint/element-zstack’s past year of commit activity
    Python 0 MIT 7 1 0 Updated Feb 14, 2025
  • element-session Public

    DataJoint Element for session management

    datajoint/element-session’s past year of commit activity
    Python 1 MIT 18 1 0 Updated Feb 14, 2025
  • element-optogenetics Public

    DataJoint Element for optogenetic experiments

    datajoint/element-optogenetics’s past year of commit activity
    Jupyter Notebook 0 MIT 8 0 0 Updated Feb 14, 2025
  • element-moseq Public

    DataJoint Element for Motion Sequencing with Keypoint-MoSeq

    datajoint/element-moseq’s past year of commit activity
    Jupyter Notebook 3 MIT 4 0 0 Updated Feb 14, 2025
  • element-miniscope Public

    DataJoint Element for miniscope calcium imaging analysis with CaImAn

    datajoint/element-miniscope’s past year of commit activity
    Jupyter Notebook 2 MIT 14 2 2 Updated Feb 14, 2025
  • element-lab Public

    DataJoint Element for lab management

    datajoint/element-lab’s past year of commit activity
    Python 1 MIT 16 2 0 Updated Feb 14, 2025
  • element-interface Public

    Common functions for the DataJoint Elements

    datajoint/element-interface’s past year of commit activity
    Python 3 MIT 17 9 (1 issue needs help) 2 Updated Feb 14, 2025
  • element-electrode-localization Public

    DataJoint Element for localizing Neuropixels electrodes

    datajoint/element-electrode-localization’s past year of commit activity
    Jupyter Notebook 0 MIT 9 3 0 Updated Feb 14, 2025
  • element-deeplabcut Public

    DataJoint Element for behavioral analysis with DeepLabCut

    datajoint/element-deeplabcut’s past year of commit activity
    Jupyter Notebook 13 MIT 38 8 (1 issue needs help) 0 Updated Feb 14, 2025