Merge branch 'main' into all-contributors/add-melanieganz

datalad-handbook · Dec 18, 2023 · a7144ad · a7144ad
2 parents 61c1759 + 0d98b52
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diff --git a/.all-contributorsrc b/.all-contributorsrc
@@ -626,6 +626,16 @@
       "contributions": [
         "bug"
       ]
+    },
+    {
+      "login": "damienfrancois",
+      "name": "Damien François",
+      "avatar_url": "https://avatars.githubusercontent.com/u/1721582?v=4",
+      "profile": "http://www.uclouvain.be/damien.francois",
+      "contributions": [
+        "bug",
+        "content"
+      ]
     }
   ],
   "contributorsPerLine": 7,

diff --git a/.zenodo.json b/.zenodo.json
@@ -244,6 +244,11 @@
       "affiliation": "Universität Münster",
       "orcid": "0000-0001-5291-1939"
     },
+    {
+      "name": "François, Damian",
+      "affiliation": "Université catholique de Louvain",
+      "orcid": "0000-0001-5131-9431"
+    },
     {
       "name": "Hanke, Michael",
       "affiliation": "Institute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Centre Jülich, Jülich, Germany and Institute of Systems Neuroscience, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany",

diff --git a/README.md b/README.md
@@ -138,6 +138,7 @@ Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/d
       <td align="center" valign="top" width="14.28%"><a href="http://dannygarside.co.uk"><img src="https://avatars.githubusercontent.com/u/3739866?v=4?s=100" width="100px;" alt="Danny Garside"/><br /><sub><b>Danny Garside</b></sub></a><br /><a href="https://github.com/datalad-handbook/book/issues?q=author%3Ada5nsy" title="Bug reports">🐛</a> <a href="#maintenance-da5nsy" title="Maintenance">🚧</a></td>
       <td align="center" valign="top" width="14.28%"><a href="https://github.com/jkuhl-uni"><img src="https://avatars.githubusercontent.com/u/82444481?v=4?s=100" width="100px;" alt="Justus Kuhlmann"/><br /><sub><b>Justus Kuhlmann</b></sub></a><br /><a href="#content-jkuhl-uni" title="Content">🖋</a></td>
       <td align="center" valign="top" width="14.28%"><a href="https://sites.google.com/view/melanieganz/home"><img src="https://avatars.githubusercontent.com/u/25242978?v=4?s=100" width="100px;" alt="melanieganz"/><br /><sub><b>melanieganz</b></sub></a><br /><a href="https://github.com/datalad-handbook/book/issues?q=author%3Amelanieganz" title="Bug reports">🐛</a></td>
+      <td align="center" valign="top" width="14.28%"><a href="http://www.uclouvain.be/damien.francois"><img src="https://avatars.githubusercontent.com/u/1721582?v=4?s=100" width="100px;" alt="Damien François"/><br /><sub><b>Damien François</b></sub></a><br /><a href="https://github.com/datalad-handbook/book/issues?q=author%3Adamienfrancois" title="Bug reports">🐛</a> <a href="#content-damienfrancois" title="Content">🖋</a></td>
     </tr>
   </tbody>
 </table>

diff --git a/docs/beyond_basics/101-170-dataladrun.rst b/docs/beyond_basics/101-170-dataladrun.rst
@@ -223,7 +223,7 @@ This makes it easy to associate a result (via its branch) with the log, error, o
    # git checkout -b <name> creates a new branch and checks it out
    $ git checkout -b "job-$JOBID"
 
-Importantly, the ``$JOB-ID`` isn't hardcoded into the script but it can be given to the script as an environment or input variable at the time of job submission.
+Importantly, the ``$JOBID`` isn't hardcoded into the script but it can be given to the script as an environment or input variable at the time of job submission.
 The code snippet above uses a bash :term:`environment variable` (``$JOBID``, as indicated by the all-upper-case variable name with a leading ``$``).
 It will be defined in the job submission -- this is shown and explained in detail in the respective paragraph below.
 

diff --git a/docs/code_from_chapters/osoh.rst b/docs/code_from_chapters/osoh.rst
diff --git a/docs/index.rst b/docs/index.rst
@@ -130,6 +130,7 @@ Code lists from chapters
    code_from_chapters/yale
    code_from_chapters/dgpa
    code_from_chapters/neurohackademy
+   code_from_chapters/osoh.rst
 ..
   stuff that we do not need or show at the moment
 

diff --git a/docs/r.rst b/docs/r.rst
@@ -63,6 +63,8 @@ failed -- sorry about this.
   :ref:`usecase_HCP_dataset`
 :redirect:`install`
   :ref:`install`
+:redirect:`osoh`
+  :ref:`osoh`
 :redirect:`reproducible-paper`
   :ref:`usecase_reproducible_paper`
 :redirect:`RIA`

diff --git a/docs/usecases/openneuro.rst b/docs/usecases/openneuro.rst
@@ -51,7 +51,10 @@ As this method can just as easily provide you with a browseable-but-small-in-siz
    datalad clone ///openneuro # install superdataset
    cd openneuro
    # install all openneuro datasets but do not retrieve data (this takes time)
-   datalad get -n openneuro/ds*
+   datalad get -n ds*
+
+Because the number of datasets available on OpenNeuro is quite large, you can speed up the installation of all subdatasets by parallelization.
+The Gist :ref:`parallelize` shows you how.
 
 What's DataLad and why should I use it to do this?
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^