Add GIN datacite-file generation from BIDS dataset_description.json #88
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
christian-monch
changed the title
Member
|
Just stumbled over this again - its cool functionality to have! |
Member
|
@christian-monch did you still have changes to add to this PR? Can you remember what level of refactoring was necessary? |
Contributor
Author
|
@jsheunis: will take a look shortly |
Member
|
Can we put this in draft mode, please? |
Member
|
I am putting this PR in draft mode. |
Contributor
|
Did not realize this was in progress. 🤦🏾 So I created a package that sort of does the same thing... |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR add a new command:
bids2gindatacite
to datalad. This command will process the content of the top-level (w.r.t. to a dataset) "dataset_description.json"-file and create a file named "datacite.yml". This file is expected by GIN in order to request a DOI for a dataset on GIN.
Due to the nature of dataset_description.json, not all required fields in "datacite.yml" can be filled automatically. Where no information is available, the command will add an example-section in "datacite.yml", which contains an example and instructions on how to provide the missing data.
This is an early PR due to the hackathon time pressure-feeling. It still needs: