open-fetal-mri

awesome open source tools for fetal MRI analysis

• 3D Reconstruction
• Slice-to-Volume Registration
• Quality Assessment
• Segmentation

3D Reconstruction

• https://github.com/daviddmc/NeSVoR
• gift-surg/NiftyMIC
• bkainz/fetalReconstruction
• SVRTK
• https://github.com/Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit
• https://github.com/ilegorreta/Automatic-Fetal-Brain-Reconstruction-Pipeline
• https://github.com/lcorgra/RGDSVR

Slice-to-Volume Registration

• https://github.com/daviddmc/SVoRT
• https://github.com/allard-shi/affirm
• https://github.com/farrell236/SVRnet
• https://github.com/bchimagine/DeepPredictiveMotionTracking
• https://github.com/SadeghMSalehi/DeepRegistration

Quality Assessment

• daviddmc/fetal-IQA
• FNNDSC/pl-fetal-brain-assessment

Segmentation

• LucasFidon/trustworthy-ai-fetal-brain-segmentation
• gift-surg/MONAIfbs
• https://github.com/chrisorozco1097/masking_tool
• https://github.com/wulalago/FetalCPSeg
• https://github.com/jwhong1125/fetal_CP_segmentation
• https://github.com/gift-surg/FetalBrainParcellation

Super-resolution

• https://github.com/daviddmc/STRESS

Pose Estimation

https://github.com/daviddmc/fetal-pose

Motion Analysis

https://github.com/daviddmc/fetal-motion