Merge pull request #235 from davidycliao/0.0.7 #759
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| # name: R-MacOS | |
| # | |
| # on: | |
| # push: | |
| # branches: [ "main" ] | |
| # pull_request: | |
| # branches: [ "main" ] | |
| # | |
| # permissions: | |
| # contents: read | |
| # | |
| # jobs: | |
| # build: | |
| # runs-on: macos-latest | |
| # | |
| # strategy: | |
| # matrix: | |
| # r-version: ['4.4.0', '4.3.2'] | |
| # | |
| # steps: | |
| # - uses: actions/checkout@v3 | |
| # | |
| # - name: Update Homebrew | |
| # run: | | |
| # brew update | |
| # | |
| # - name: Install pandoc | |
| # run: | | |
| # for i in {1..3}; do | |
| # brew install pandoc && break || sleep 15 | |
| # done | |
| # | |
| # - name: Install gfortran and configure Makevars | |
| # run: | | |
| # brew install gcc | |
| # mkdir -p ~/.R | |
| # touch ~/.R/Makevars | |
| # echo "FC=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars | |
| # echo "F77=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars | |
| # echo "FLIBS=-L$(brew --prefix)/lib/gcc/current -lgfortran -lquadmath -lm" >> ~/.R/Makevars | |
| # echo "LDFLAGS=-L$(brew --prefix)/lib/gcc/current" >> ~/.R/Makevars | |
| # | |
| # - name: Set up R ${{ matrix.r-version }} | |
| # uses: r-lib/actions/setup-r@v2 | |
| # with: | |
| # r-version: ${{ matrix.r-version }} | |
| # | |
| # - name: Install R dependencies | |
| # run: | | |
| # Rscript -e "install.packages(c('remotes', 'rcmdcheck', 'reticulate', 'renv', 'knitr', 'rmarkdown', 'lsa', 'purrr', 'testthat', 'htmltools'), repos='https://cran.r-project.org')" | |
| # Rscript -e "if (getRversion() >= '4.4.0') remotes::install_version('Matrix', version = '1.5.3') else install.packages('Matrix', type = 'binary')" | |
| # Rscript -e "remotes::install_version('htmltools', version = '0.5.8')" | |
| # Rscript -e "renv::restore()" | |
| # | |
| # - name: Set up Python | |
| # uses: actions/setup-python@v2 | |
| # with: | |
| # python-version: '3.10.x' | |
| # | |
| # - name: Install Python virtualenv | |
| # run: pip install virtualenv | |
| # | |
| # - name: Create Python virtual environment | |
| # run: virtualenv flair_env | |
| # | |
| # - name: Install Python dependencies in virtual environment | |
| # run: | | |
| # source flair_env/bin/activate | |
| # pip install --upgrade pip | |
| # pip install scipy==1.12.0 | |
| # pip install flair | |
| # | |
| # - name: Remove Python cache files | |
| # run: find . -name '*.pyc' -delete | |
| # | |
| # - name: Check (with virtual environment) | |
| # run: | | |
| # source flair_env/bin/activate | |
| # R CMD build --no-build-vignettes . | |
| # shell: bash | |
| # name: R-MacOS | |
| # | |
| # on: | |
| # push: | |
| # branches: [ "main" ] | |
| # pull_request: | |
| # branches: [ "main" ] | |
| # | |
| # permissions: | |
| # contents: read | |
| # | |
| # jobs: | |
| # build: | |
| # runs-on: macos-latest | |
| # strategy: | |
| # matrix: | |
| # r-version: ['4.4.0', '4.3.2'] | |
| # fail-fast: false | |
| # | |
| # steps: | |
| # - uses: actions/checkout@v3 | |
| # | |
| # - name: Update Homebrew | |
| # run: brew update | |
| # | |
| # - name: Install pandoc | |
| # run: | | |
| # for i in {1..3} | |
| # do | |
| # brew install pandoc && break || sleep 15 | |
| # done | |
| # | |
| # - name: Install gfortran and configure Makevars | |
| # run: | | |
| # brew install gcc | |
| # mkdir -p ~/.R | |
| # touch ~/.R/Makevars | |
| # echo "FC=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars | |
| # echo "F77=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars | |
| # echo "FLIBS=-L$(brew --prefix)/lib/gcc/current -lgfortran -lquadmath -lm" >> ~/.R/Makevars | |
| # echo "LDFLAGS=-L$(brew --prefix)/lib/gcc/current" >> ~/.R/Makevars | |
| # | |
| # - name: Set up R ${{ matrix.r-version }} | |
| # uses: r-lib/actions/setup-r@v2 | |
| # with: | |
| # r-version: ${{ matrix.r-version }} | |
| # | |
| # - name: Install R dependencies | |
| # run: | | |
| # # 基礎包安裝 | |
| # Rscript -e 'install.packages(c("remotes", "rcmdcheck", "reticulate", "renv", "knitr", "rmarkdown", "lsa", "purrr", "testthat"), repos="https://cran.r-project.org")' | |
| # | |
| # # 根據 R 版本有條件地安裝 Matrix | |
| # Rscript -e ' | |
| # if (getRversion() >= "4.4.0") { | |
| # install.packages("Matrix") | |
| # } else { | |
| # remotes::install_version("Matrix", version = "1.5.1", repos = "https://cran.r-project.org") | |
| # } | |
| # ' | |
| # | |
| # # 安裝指定版本的 htmltools | |
| # Rscript -e 'remotes::install_version("htmltools", version = "0.5.8")' | |
| # | |
| # # 最後執行 renv::restore() | |
| # Rscript -e 'renv::restore()' | |
| # | |
| # - name: Set up Python | |
| # uses: actions/setup-python@v2 | |
| # with: | |
| # python-version: '3.10.x' | |
| # | |
| # - name: Install Python virtualenv | |
| # run: pip install virtualenv | |
| # | |
| # - name: Create Python virtual environment | |
| # run: virtualenv flair_env | |
| # | |
| # - name: Install Python dependencies in virtual environment | |
| # run: | | |
| # source flair_env/bin/activate | |
| # pip install --upgrade pip | |
| # pip install scipy==1.12.0 | |
| # pip install flair | |
| # | |
| # - name: Remove Python cache files | |
| # run: find . -name '*.pyc' -delete | |
| # | |
| # - name: Check (with virtual environment) | |
| # run: | | |
| # source flair_env/bin/activate | |
| # R CMD build --no-build-vignettes . | |
| # shell: bash | |
| name: R-MacOS | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: macos-latest | |
| strategy: | |
| matrix: | |
| r-version: ['4.4.0', '4.2.3'] # 改為 4.2.3 | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Update Homebrew | |
| run: brew update | |
| - name: Install pandoc | |
| run: | | |
| for i in {1..3} | |
| do | |
| brew install pandoc && break || sleep 15 | |
| done | |
| - name: Install gfortran and configure Makevars | |
| run: | | |
| brew install gcc | |
| mkdir -p ~/.R | |
| touch ~/.R/Makevars | |
| echo "FC=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars | |
| echo "F77=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars | |
| echo "FLIBS=-L$(brew --prefix)/lib/gcc/current -lgfortran -lquadmath -lm" >> ~/.R/Makevars | |
| echo "LDFLAGS=-L$(brew --prefix)/lib/gcc/current" >> ~/.R/Makevars | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Install R dependencies | |
| run: | | |
| # 首先安裝基礎包 | |
| Rscript -e 'install.packages(c("remotes", "rcmdcheck", "reticulate", "renv"), repos="https://cran.r-project.org")' | |
| # 根據 R 版本安裝相應的 Matrix 版本 | |
| Rscript -e ' | |
| if (getRversion() >= "4.4.0") { | |
| remotes::install_version("Matrix", version = "1.5-3") | |
| } else if (getRversion() >= "4.2.0" && getRversion() < "4.3.0") { | |
| remotes::install_version("Matrix", version = "1.4-1") | |
| } else { | |
| remotes::install_version("Matrix", version = "1.5-1") | |
| } | |
| ' | |
| # 安裝其他依賴 | |
| Rscript -e 'install.packages(c("knitr", "rmarkdown", "lsa", "purrr", "testthat"), repos="https://cran.r-project.org")' | |
| # 安裝特定版本的 htmltools | |
| Rscript -e 'remotes::install_version("htmltools", version = "0.5.8")' | |
| # renv 相關操作 | |
| Rscript -e ' | |
| tryCatch({ | |
| renv::restore() | |
| }, error = function(e) { | |
| message("Error in renv::restore(): ", e$message) | |
| if (!requireNamespace("Matrix", quietly = TRUE)) { | |
| if (getRversion() >= "4.4.0") { | |
| install.packages("Matrix") | |
| } else if (getRversion() >= "4.2.0" && getRversion() < "4.3.0") { | |
| remotes::install_version("Matrix", version = "1.4-1") | |
| } else { | |
| remotes::install_version("Matrix", version = "1.5-1") | |
| } | |
| } | |
| }) | |
| ' | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 # 更新到 v4 | |
| with: | |
| python-version: '3.10.x' | |
| cache: 'pip' | |
| - name: Install Python virtualenv | |
| run: pip install virtualenv | |
| - name: Create Python virtual environment | |
| run: virtualenv flair_env | |
| - name: Install Python dependencies in virtual environment | |
| run: | | |
| source flair_env/bin/activate | |
| pip install --upgrade pip | |
| pip install scipy==1.12.0 | |
| pip install flair | |
| deactivate | |
| - name: Remove Python cache files | |
| run: find . -name '*.pyc' -delete | |
| - name: Check (with virtual environment) | |
| run: | | |
| source flair_env/bin/activate | |
| set -e | |
| R CMD build --no-build-vignettes . | |
| shell: bash |