Merge pull request #279 from davidycliao/0.1.7 #695
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| name: R-ubuntu | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| r-version: ['4.3.2', '4.2.0', '4.2.1'] | |
| fail-fast: false | |
| env: | |
| R_LIBS_USER: /home/runner/work/_temp/Library | |
| TZ: UTC | |
| R_CHECK_SYSTEM_CLOCK: FALSE | |
| NOT_CRAN: true | |
| RSPM: https://packagemanager.posit.co/cran/__linux__/focal/latest | |
| RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/__linux__/focal/latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| # 添加磁盤清理步驟 | |
| - name: Free Disk Space | |
| run: | | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf /usr/local/lib/android | |
| sudo rm -rf /opt/ghc | |
| sudo rm -rf /opt/hostedtoolcache/CodeQL | |
| df -h | |
| - name: Cache R dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/R/x86_64-pc-linux-gnu-library/ | |
| key: ${{ runner.os }}-r-${{ matrix.r-version }}-${{ hashFiles('**/renv.lock') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.r-version }}- | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| r-version: ${{ matrix.r-version }} | |
| # Install Matrix first with version control | |
| - name: Install R Matrix package | |
| run: | | |
| install.packages('remotes') | |
| version <- getRversion() | |
| tryCatch({ | |
| if (version >= "4.3.2") { | |
| remotes::install_version("Matrix", version = "1.5-1", repos = "https://cran.r-project.org") | |
| } else if (version >= "4.2.0" && version < "4.3.0") { | |
| remotes::install_version("Matrix", version = "1.4-1", repos = "https://cran.r-project.org", force = TRUE) | |
| } else if (version >= "4.1.0" && version < "4.2.0") { | |
| remotes::install_version("Matrix", version = "1.3-4", repos = "https://cran.r-project.org") | |
| } | |
| message(sprintf("R version: %s, Matrix version: %s", version, packageVersion("Matrix"))) | |
| }, error = function(e) { | |
| message("Error installing Matrix: ", e$message) | |
| if (version < "4.3.0") { | |
| message("Attempting fallback installation...") | |
| remotes::install_version("Matrix", version = "1.4-1", | |
| repos = "https://cran.r-project.org", | |
| force = TRUE) | |
| } | |
| }) | |
| shell: Rscript {0} | |
| # Verify Matrix installation | |
| - name: Verify Matrix Installation | |
| run: | | |
| tryCatch({ | |
| if (!requireNamespace("Matrix", quietly = TRUE)) { | |
| message("Matrix package not installed properly") | |
| quit(status = 1) | |
| } | |
| version <- as.character(packageVersion("Matrix")) | |
| r_version <- getRversion() | |
| message("Current configuration:") | |
| message("R version: ", r_version) | |
| message("Matrix version: ", version) | |
| # 驗證版本相容性 | |
| if (r_version >= "4.3.2" && version != "1.5-1") { | |
| message("Warning: Unexpected Matrix version for R 4.3.2+") | |
| } else if (r_version >= "4.2.0" && r_version < "4.3.0" && version != "1.4-1") { | |
| message("Warning: Unexpected Matrix version for R 4.2.x") | |
| } else if (r_version >= "4.1.0" && r_version < "4.2.0" && version != "1.3-4") { | |
| message("Warning: Unexpected Matrix version for R 4.1.x") | |
| } | |
| }, error = function(e) { | |
| message("Error during Matrix verification: ", e$message) | |
| quit(status = 1) | |
| }) | |
| shell: Rscript {0} | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10.x' | |
| - name: Setup pip cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Create and configure venv | |
| run: | | |
| python -m venv flair_env | |
| source flair_env/bin/activate | |
| mkdir -p ~/.cache/pip | |
| pip install --upgrade pip | |
| # 分步安裝以減少內存使用 | |
| pip install --no-cache-dir scipy==1.12.0 | |
| pip install --no-cache-dir torch --index-url https://download.pytorch.org/whl/cpu | |
| pip install --no-cache-dir flair | |
| pip install --no-cache-dir gensim==4.3.2 | |
| deactivate | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y --no-install-recommends \ | |
| libcurl4-openssl-dev \ | |
| libssl-dev \ | |
| libxml2-dev \ | |
| libfontconfig1-dev \ | |
| libharfbuzz-dev \ | |
| libfribidi-dev \ | |
| libfreetype6-dev \ | |
| libpng-dev \ | |
| libtiff5-dev \ | |
| libjpeg-dev | |
| - name: Install base R dependencies | |
| run: | | |
| options(repos = c(CRAN = "https://cloud.r-project.org")) | |
| install.packages(c("remotes", "rcmdcheck", "reticulate", "renv", "knitr", | |
| "rmarkdown", "lsa", "purrr", "testthat", "ggplot2")) | |
| shell: Rscript {0} | |
| - name: Restore R environment | |
| run: | | |
| if (!requireNamespace('renv', quietly = TRUE)) install.packages('renv') | |
| options(warn = 2) | |
| tryCatch({ | |
| renv::restore() | |
| }, error = function(e) { | |
| message("Error in renv::restore(): ", e$message) | |
| install.packages(c("knitr", "rmarkdown", "lsa", "purrr", "ggplot2")) | |
| }) | |
| shell: Rscript {0} | |
| - name: Check R package | |
| run: | | |
| source flair_env/bin/activate | |
| export TMPDIR="/tmp/R-pkg-tmp" | |
| mkdir -p $TMPDIR | |
| R CMD build . --no-build-vignettes | |
| R CMD check *tar.gz --no-build-vignettes --no-manual --no-tests --no-examples || true | |
| deactivate | |
| shell: bash |