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Update r_macos.yml
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davidycliao committed Sep 21, 2024
1 parent 35249d5 commit 8e8fd57
Showing 1 changed file with 75 additions and 2 deletions.
77 changes: 75 additions & 2 deletions .github/workflows/r_macos.yml
Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,76 @@
#
# See https://github.com/r-lib/actions/tree/master/examples#readme for
# additional example workflows available for the R community.
#
# name: R-MacOS
#
# on:
# push:
# branches: [ "main" ]
# pull_request:
# branches: [ "main" ]
#
# permissions:
# contents: read
#
# jobs:
# build:
# runs-on: macos-latest
#
# strategy:
# matrix:
# r-version: ['4.4.0', '4.3.2', '4.2.1']
#
# steps:
# - uses: actions/checkout@v3
#
# - name: Update Homebrew
# run: |
# brew update
# - name: Install pandoc
# run: |
# for i in {1..3}; do
# brew install pandoc && break || sleep 15
# done
# - name: Set up R ${{ matrix.r-version }}
# uses: r-lib/actions/setup-r@v2
# with:
# r-version: ${{ matrix.r-version }}
#
# - name: Install R dependencies
# run: |
# Rscript -e "install.packages(c('remotes', 'rcmdcheck', 'reticulate', 'renv', 'knitr', 'rmarkdown', 'lsa', 'purrr', 'testthat', 'htmltools'), repos='https://cran.r-project.org')"
# Rscript -e "if (getRversion() >= '4.4.0') remotes::install_version('Matrix', version = '1.5.3')"
# Rscript -e "remotes::install_version('htmltools', version = '0.5.8')"
# Rscript -e "renv::restore()"
#
#
# - name: Set up Python
# uses: actions/setup-python@v2
# with:
# python-version: '3.10.x'
#
# - name: Install Python virtualenv
# run: pip install virtualenv
#
# - name: Create Python virtual environment
# run: virtualenv flair_env
#
# - name: Install Python dependencies in virtual environment
# run: |
# source flair_env/bin/activate
# pip install --upgrade pip
# pip install scipy==1.12.0
# pip install flair
# - name: Remove Python cache files
# run: find . -name '*.pyc' -delete
#
# - name: Check (with virtual environment)
# run: |
# source flair_env/bin/activate
# R CMD build --no-build-vignettes .
# shell: bash


name: R-MacOS

Expand All @@ -31,11 +101,13 @@ jobs:
- name: Update Homebrew
run: |
brew update
- name: Install pandoc
run: |
for i in {1..3}; do
brew install pandoc && break || sleep 15
done
- name: Set up R ${{ matrix.r-version }}
uses: r-lib/actions/setup-r@v2
with:
Expand All @@ -44,11 +116,10 @@ jobs:
- name: Install R dependencies
run: |
Rscript -e "install.packages(c('remotes', 'rcmdcheck', 'reticulate', 'renv', 'knitr', 'rmarkdown', 'lsa', 'purrr', 'testthat', 'htmltools'), repos='https://cran.r-project.org')"
Rscript -e "if (getRversion() >= '4.4.0') remotes::install_version('Matrix', version = '1.5.3')"
Rscript -e "if (getRversion() >= '4.4.0') remotes::install_version('Matrix', version = '1.5.3') else install.packages('Matrix', type = 'binary')"
Rscript -e "remotes::install_version('htmltools', version = '0.5.8')"
Rscript -e "renv::restore()"
- name: Set up Python
uses: actions/setup-python@v2
with:
Expand All @@ -66,6 +137,7 @@ jobs:
pip install --upgrade pip
pip install scipy==1.12.0
pip install flair
- name: Remove Python cache files
run: find . -name '*.pyc' -delete

Expand All @@ -74,3 +146,4 @@ jobs:
source flair_env/bin/activate
R CMD build --no-build-vignettes .
shell: bash

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