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remove runtime dependency on mpi4py #87

remove runtime dependency on mpi4py

remove runtime dependency on mpi4py #87

Workflow file for this run

name: Build and test Patch
on: [push]
jobs:
build:
name: build py${{ matrix.py }}, NEURON ${{ matrix.nrn }}
runs-on: ubuntu-latest
strategy:
matrix:
py: ["3.9","3.10"]
nrn: ["8.1.0", "8.2.2"]
include:
- nrn: "8.0.0"
py: "3.9"
- nrn: "8.2.2"
py: "3.11"
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.py }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.py }}
- name: Install apt dependencies
run: |
sudo apt-get update
sudo apt-get install openmpi-bin libopenmpi-dev
- name: Cache pip
uses: actions/cache@v3
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
restore-keys: |
${{ runner.os }}-pip-
${{ runner.os }}-
- name: Install dependencies & self
run: |
python -m pip install --upgrade pip
pip install -e . --no-deps
pip install -r requirements.txt --prefer-binary
pip install -e .
pip install NEURON==${{ matrix.nrn }}
- name: Run tests & coverage
run: |
cd tests
coverage run --parallel-mode -m unittest discover -v -s ./separate
coverage run --parallel-mode -m unittest discover -v -s .
mpiexec -n 2 coverage run --parallel-mode -m unittest discover -v -s .
bash <(curl -s https://codecov.io/bash)