remove runtime dependency on mpi4py #87
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name: Build and test Patch | |
on: [push] | |
jobs: | |
build: | |
name: build py${{ matrix.py }}, NEURON ${{ matrix.nrn }} | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
py: ["3.9","3.10"] | |
nrn: ["8.1.0", "8.2.2"] | |
include: | |
- nrn: "8.0.0" | |
py: "3.9" | |
- nrn: "8.2.2" | |
py: "3.11" | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.py }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.py }} | |
- name: Install apt dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install openmpi-bin libopenmpi-dev | |
- name: Cache pip | |
uses: actions/cache@v3 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
${{ runner.os }}- | |
- name: Install dependencies & self | |
run: | | |
python -m pip install --upgrade pip | |
pip install -e . --no-deps | |
pip install -r requirements.txt --prefer-binary | |
pip install -e . | |
pip install NEURON==${{ matrix.nrn }} | |
- name: Run tests & coverage | |
run: | | |
cd tests | |
coverage run --parallel-mode -m unittest discover -v -s ./separate | |
coverage run --parallel-mode -m unittest discover -v -s . | |
mpiexec -n 2 coverage run --parallel-mode -m unittest discover -v -s . | |
bash <(curl -s https://codecov.io/bash) |