update ci #92
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Build and test Patch | |
on: [push] | |
jobs: | |
build: | |
name: build py${{ matrix.py }}, NEURON ${{ matrix.nrn }} | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
py: ["3.9","3.10"] | |
nrn: ["8.1.0", "8.2.2"] | |
include: | |
- nrn: "8.0.0" | |
py: "3.9" | |
- nrn: "8.2.2" | |
py: "3.11" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.py }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.py }} | |
- name: Install apt dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install openmpi-bin libopenmpi-dev | |
- name: Cache pip | |
uses: actions/cache@v4 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ hashFiles('pyproject.toml') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
${{ runner.os }}- | |
- name: Install dependencies & self | |
run: | | |
python -m pip install --upgrade pip | |
pip install .[test,parallel] | |
pip install NEURON==${{ matrix.nrn }} | |
- name: Run tests & coverage | |
run: | | |
cd tests | |
coverage run --parallel-mode -m unittest discover -v -s ./separate | |
coverage run --parallel-mode -m unittest discover -v -s . | |
mpiexec -n 2 coverage run --parallel-mode -m unittest discover -v -s . | |
bash <(curl -s https://codecov.io/bash) |