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DOI

BioHackathon 2015 repository aggregation

This repository serves as an archive for the NBDC/DBCLS BioHackathon 2015. All relevant git repositories that are referenced in the hackathon proceedings are added here as submodules and checked out to the nearest commit after the hackathon (or nearest coherent set of commits) in order to reflect the state of the included repositories by the end of the event. Listing:

  • BH15: Proteome assay annotation
  • DataFairPort: FAIR projector prototype development
  • HPO-japanese: Phenotype ontology translation
  • OpenLifeData2SADI: OpenLifeData to SADI deployment
  • OrthologyOntology: Orthology ontology development and application
  • bh15-fossil-paralogy: Molecular evolutionary process calibration
  • bio-virtuoso: Docker container registry development
  • disgenet: Integration of text-mined and curated disease-phenotype data
  • ensembl-docker: Docker container registry development
  • guix: GNU Guix extension and deployment
  • guix-bioinformatics: GNU Guix extension and deployment
  • guix-notes: GNU Guix extension and deployment
  • linkdbRDF: Plant metabolome database development
  • rdf-vcf: Variant call transformation
  • semantichaiku: Semantic haiku generation
  • tool-registry-schemas: Docker container registry development
  • uniprot2owl: Protein semantic representation
  • vg: Variation graph construction
  • workflow-service: Extending the Common Workflow Language

In addition, this repository has a wiki used during the hackathon (with some minor additions later on to add previously not included repositories).