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docs: main features
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kiyoon committed Aug 1, 2024
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Bio data is a little messy to work with, and everybody deserves a clean database. This package helps you to convert bio data to a database.

Written in Rust, thus equipped with extremely fast parsers. Packaged for python, so anyone can easily install and use it.
Partially written in Rust, thus equipped with an extremely fast uniprot xml parser. Packaged for python, so anyone can easily install and use it.

So far, there is only one function implemented: **convert uniprot data to postgresql**. This package focuses more on parsing the data and inserting it into the database, rather than curating the data.
This package focuses more on parsing the data and inserting it into the database, rather than curating the data. Main features include:

- **Uniprot**: Parse the uniprot xml file and insert the data into the database.
- **BindingDB**: Fix the HTML entities in the assay table.
- **PostgreSQL Helpers**: Useful functions to work with PostgreSQL.
- **SMILES**: Canonicalize SMILES strings.
- **Polars**: Useful functions to work with Polars.

[📚 Documentation](https://deargen.github.io/bio-data-to-db/) has the API reference and the usage.

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