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DeepOmics Lab

Focus on Bioinformatics Toolkits Development

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Welcome to DeepomicsLab!

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  1. GCNFrame GCNFrame Public

    This is a python package for genomics study with a GCN framework.

    Python 38 7

  2. SpecHLA SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

    C++ 33 9

  3. DeepHost DeepHost Public

    This is the repository for DeepHost, a phage host prediction tool.

    Python 17

  4. SpecHap SpecHap Public

    C++ 11 3

  5. LocalHGT LocalHGT Public

    Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

    Python 11 1

  6. SeCNV SeCNV Public

    This is the repository for SeCNV, a single cell copy number profiling tool.

    Python 10 2

Repositories

Showing 10 of 54 repositories
  • deepomicslab/GutMeta_analysis_scripts’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Sep 19, 2024
  • deepomicslab/plasmid_web’s past year of commit activity
    Vue 0 0 0 0 Updated Sep 16, 2024
  • deepomicslab/plasmid_api’s past year of commit activity
    Python 0 0 0 0 Updated Sep 16, 2024
  • TCRclub Public
    deepomicslab/TCRclub’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 3, 2024
  • CASCAT Public
    deepomicslab/CASCAT’s past year of commit activity
    Python 1 0 0 0 Updated Aug 28, 2024
  • SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

    deepomicslab/SpecHLA’s past year of commit activity
    C++ 33 MIT 9 8 0 Updated Aug 13, 2024
  • LocalHGT Public

    Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

    deepomicslab/LocalHGT’s past year of commit activity
    Python 11 1 0 0 Updated Aug 8, 2024
  • STAGUE Public
    deepomicslab/STAGUE’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Aug 6, 2024
  • deepomicslab/crustdb_web’s past year of commit activity
    Vue 0 0 0 0 Updated Aug 4, 2024
  • deepomicslab/crustdb_api’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 27, 2024

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