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update docs pages
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Robert Morgan committed Mar 3, 2021
1 parent 45ba84d commit 0bebf20
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161 changes: 127 additions & 34 deletions docs/check.html
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Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,7 @@ <h1 class="title">Module <code>deeplenstronomy.check</code></h1>
exec(f&#39;import lenstronomy.LensModel.Profiles.{model} as {model}_lens&#39;)


from deeplenstronomy.utils import KeyPathDict
from deeplenstronomy.utils import KeyPathDict, read_cadence_file
import deeplenstronomy.distributions as distributions

class ConfigFileError(Exception): pass
Expand Down Expand Up @@ -838,9 +838,12 @@ <h1 class="title">Module <code>deeplenstronomy.check</code></h1>
errs.append(&#39;GEOMETRY.&#39; + k + &#39;.&#39; + config_k + &#39; needs a valid integer index greater than zero&#39;)

# Plane must have a redshift
if &#39;REDSHIFT&#39; not in config_k in self.config[&#39;GEOMETRY&#39;][k][config_k][&#39;PARAMETERS&#39;].keys():
errs.append(&#39;REDSHIFT is missing from GEOMETRY.&#39; + k + &#39;.&#39; + config_k)

try:
if &#39;REDSHIFT&#39; not in self.config[&#39;GEOMETRY&#39;][k][config_k][&#39;PARAMETERS&#39;].keys():
errs.append(&#39;REDSHIFT is missing from GEOMETRY.&#39; + k + &#39;.&#39; + config_k)
except AttributeError:
errs.append(&#39;Incorrect format detected in &#39; + k + &#39;.&#39; + config_k)

detected_objects = []
for obj_k in self.config[&#39;GEOMETRY&#39;][k][config_k].keys():
# check individual object properties
Expand Down Expand Up @@ -913,15 +916,43 @@ <h1 class="title">Module <code>deeplenstronomy.check</code></h1>
if &#34;NITES&#34; not in self.config[&#39;GEOMETRY&#39;][k][config_k].keys():
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES is missing the NITES parameter&#34;)
else:
if not isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], list):
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be a list&#34;)
if not (isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], list) or isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], str)):
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be a list or a filename&#34;)
else:
# listed nights must be numeric
try:
nites = [int(float(x)) for x in self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;]]
del nites
except TypeError:
errs.append(&#34;Listed NITES in GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be numeric&#34;)
if isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], list):
nitelists = [self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;]]
else:
# filename of cadence file
try:
cadence_dict = read_cadence_file(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;])

# Pointings must be incrementally sequenced
nitelists = []
bands = set(self.config[&#39;SURVEY&#39;][&#39;PARAMETERS&#39;][&#39;BANDS&#39;].strip().split(&#39;,&#39;))
pointings = [x for x in cadence_dict.keys() if x.startswith(&#39;POINTING_&#39;)]
if len(pointings) == 0:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + &#34; contains no POINTING entries&#34;)
for pointing in pointings:
if set(list(cadence_dict[pointing].keys())) != bands:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + pointing + &#34; does not contain same bands as the survey&#34;)
else:
cad_length = len(cadence_dict[pointing][self.config[&#39;SURVEY&#39;][&#39;PARAMETERS&#39;][&#39;BANDS&#39;].strip().split(&#39;,&#39;)[0]])
for band in bands:
if len(cadence_dict[pointing][band]) != cad_length:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + pointing + &#34; contains cadences of different lengths&#34;)
nitelists.append(cadence_dict[pointing][band])

except Exception:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + &#34; caused an error when reading file&#34;)
nitelists = [[]]

for nitelist in nitelists:
# listed nights must be numeric
try:
nites = [int(float(x)) for x in nitelist]
del nites
except TypeError:
errs.append(&#34;Listed NITES in GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be numeric&#34;)

# Check validity of PEAK argument, if passed
if &#34;PEAK&#34; in self.config[&#39;GEOMETRY&#39;][k][config_k].keys():
Expand Down Expand Up @@ -1800,9 +1831,12 @@ <h2 class="section-title" id="header-classes">Classes</h2>
errs.append(&#39;GEOMETRY.&#39; + k + &#39;.&#39; + config_k + &#39; needs a valid integer index greater than zero&#39;)

# Plane must have a redshift
if &#39;REDSHIFT&#39; not in config_k in self.config[&#39;GEOMETRY&#39;][k][config_k][&#39;PARAMETERS&#39;].keys():
errs.append(&#39;REDSHIFT is missing from GEOMETRY.&#39; + k + &#39;.&#39; + config_k)

try:
if &#39;REDSHIFT&#39; not in self.config[&#39;GEOMETRY&#39;][k][config_k][&#39;PARAMETERS&#39;].keys():
errs.append(&#39;REDSHIFT is missing from GEOMETRY.&#39; + k + &#39;.&#39; + config_k)
except AttributeError:
errs.append(&#39;Incorrect format detected in &#39; + k + &#39;.&#39; + config_k)

detected_objects = []
for obj_k in self.config[&#39;GEOMETRY&#39;][k][config_k].keys():
# check individual object properties
Expand Down Expand Up @@ -1875,15 +1909,43 @@ <h2 class="section-title" id="header-classes">Classes</h2>
if &#34;NITES&#34; not in self.config[&#39;GEOMETRY&#39;][k][config_k].keys():
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES is missing the NITES parameter&#34;)
else:
if not isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], list):
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be a list&#34;)
if not (isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], list) or isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], str)):
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be a list or a filename&#34;)
else:
# listed nights must be numeric
try:
nites = [int(float(x)) for x in self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;]]
del nites
except TypeError:
errs.append(&#34;Listed NITES in GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be numeric&#34;)
if isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], list):
nitelists = [self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;]]
else:
# filename of cadence file
try:
cadence_dict = read_cadence_file(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;])

# Pointings must be incrementally sequenced
nitelists = []
bands = set(self.config[&#39;SURVEY&#39;][&#39;PARAMETERS&#39;][&#39;BANDS&#39;].strip().split(&#39;,&#39;))
pointings = [x for x in cadence_dict.keys() if x.startswith(&#39;POINTING_&#39;)]
if len(pointings) == 0:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + &#34; contains no POINTING entries&#34;)
for pointing in pointings:
if set(list(cadence_dict[pointing].keys())) != bands:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + pointing + &#34; does not contain same bands as the survey&#34;)
else:
cad_length = len(cadence_dict[pointing][self.config[&#39;SURVEY&#39;][&#39;PARAMETERS&#39;][&#39;BANDS&#39;].strip().split(&#39;,&#39;)[0]])
for band in bands:
if len(cadence_dict[pointing][band]) != cad_length:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + pointing + &#34; contains cadences of different lengths&#34;)
nitelists.append(cadence_dict[pointing][band])

except Exception:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + &#34; caused an error when reading file&#34;)
nitelists = [[]]

for nitelist in nitelists:
# listed nights must be numeric
try:
nites = [int(float(x)) for x in nitelist]
del nites
except TypeError:
errs.append(&#34;Listed NITES in GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be numeric&#34;)

# Check validity of PEAK argument, if passed
if &#34;PEAK&#34; in self.config[&#39;GEOMETRY&#39;][k][config_k].keys():
Expand Down Expand Up @@ -2372,9 +2434,12 @@ <h3>Methods</h3>
errs.append(&#39;GEOMETRY.&#39; + k + &#39;.&#39; + config_k + &#39; needs a valid integer index greater than zero&#39;)

# Plane must have a redshift
if &#39;REDSHIFT&#39; not in config_k in self.config[&#39;GEOMETRY&#39;][k][config_k][&#39;PARAMETERS&#39;].keys():
errs.append(&#39;REDSHIFT is missing from GEOMETRY.&#39; + k + &#39;.&#39; + config_k)

try:
if &#39;REDSHIFT&#39; not in self.config[&#39;GEOMETRY&#39;][k][config_k][&#39;PARAMETERS&#39;].keys():
errs.append(&#39;REDSHIFT is missing from GEOMETRY.&#39; + k + &#39;.&#39; + config_k)
except AttributeError:
errs.append(&#39;Incorrect format detected in &#39; + k + &#39;.&#39; + config_k)

detected_objects = []
for obj_k in self.config[&#39;GEOMETRY&#39;][k][config_k].keys():
# check individual object properties
Expand Down Expand Up @@ -2447,15 +2512,43 @@ <h3>Methods</h3>
if &#34;NITES&#34; not in self.config[&#39;GEOMETRY&#39;][k][config_k].keys():
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES is missing the NITES parameter&#34;)
else:
if not isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], list):
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be a list&#34;)
if not (isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], list) or isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], str)):
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be a list or a filename&#34;)
else:
# listed nights must be numeric
try:
nites = [int(float(x)) for x in self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;]]
del nites
except TypeError:
errs.append(&#34;Listed NITES in GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be numeric&#34;)
if isinstance(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;], list):
nitelists = [self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;]]
else:
# filename of cadence file
try:
cadence_dict = read_cadence_file(self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;])

# Pointings must be incrementally sequenced
nitelists = []
bands = set(self.config[&#39;SURVEY&#39;][&#39;PARAMETERS&#39;][&#39;BANDS&#39;].strip().split(&#39;,&#39;))
pointings = [x for x in cadence_dict.keys() if x.startswith(&#39;POINTING_&#39;)]
if len(pointings) == 0:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + &#34; contains no POINTING entries&#34;)
for pointing in pointings:
if set(list(cadence_dict[pointing].keys())) != bands:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + pointing + &#34; does not contain same bands as the survey&#34;)
else:
cad_length = len(cadence_dict[pointing][self.config[&#39;SURVEY&#39;][&#39;PARAMETERS&#39;][&#39;BANDS&#39;].strip().split(&#39;,&#39;)[0]])
for band in bands:
if len(cadence_dict[pointing][band]) != cad_length:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + pointing + &#34; contains cadences of different lengths&#34;)
nitelists.append(cadence_dict[pointing][band])

except Exception:
errs.append(&#34;GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES.&#34; + self.config[&#39;GEOMETRY&#39;][k][config_k][&#34;NITES&#34;] + &#34; caused an error when reading file&#34;)
nitelists = [[]]

for nitelist in nitelists:
# listed nights must be numeric
try:
nites = [int(float(x)) for x in nitelist]
del nites
except TypeError:
errs.append(&#34;Listed NITES in GEOMETRY.&#34; + k + &#34;.TIMESERIES.NITES must be numeric&#34;)

# Check validity of PEAK argument, if passed
if &#34;PEAK&#34; in self.config[&#39;GEOMETRY&#39;][k][config_k].keys():
Expand Down
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