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np.warnings is deprecated #1412

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np.warnings is deprecated #1412

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1ec1675
np.warnings is deprecated
Jul 16, 2025
b2e9ec4
pep8
Jul 16, 2025
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3 changes: 2 additions & 1 deletion deeptools/computeMatrixOperations.py
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@
import os
import csv
from importlib.metadata import version
import warnings


def parse_arguments():
Expand Down Expand Up @@ -427,7 +428,7 @@ def filterHeatmapValues(hm, minVal, maxVal):
minVal = -np.inf
if maxVal is None:
maxVal = np.inf
np.warnings.filterwarnings('ignore')
warnings.filterwarnings('ignore')
for i, (x, y) in enumerate(zip(np.nanmin(hm.matrix.matrix, axis=1), np.nanmax(hm.matrix.matrix, axis=1))):
# x/y will be nan iff a row is entirely nan. Don't filter.
if np.isnan(x) or (x >= minVal and y <= maxVal):
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