#Genotype Specification Language (GSL)
- get the dotnet sdk 7.0 installed
./build.sh(recommend bash shell on windows)- compiler ends up in
bin/Gslc/net7.0/Gslc.exe
$ bin/Gslc/net7.0/Gslc.exe --snapgene . foo examples/simple_fusion.gsl
$ bin/Gslc/net7.0/Gslc.exe --snapgene . foo examples/simple_fusion.gsl
// GSL core compiler version 0.5.0 (04b205)
Writing snapgene output to dir=. tag=foo path=.\foo.0.dna
Open up foo.0.dna with your favorite genbank viewer (e.g. snapgene )
This is the command line wrapper around the main GslCore library that implements the bulk of the compiler.
This version builds against the public Dmx.GslCore library (vs the Amyris GslCore)
Amyris domain specification language for rapidly specifying genetic designs
Documentation in the repo is sparse currently, but you can find
- the scientific paper describing the language here http://pubs.acs.org/doi/abs/10.1021/acssynbio.5b00194
- GSL documentation as part of the Autodesk genetic constructor tool here https://geneticconstructor.readme.io/docs/genotype-specification-language
- the press release on the GSL / Autodesk collaboration here http://investors.amyris.com/releasedetail.cfm?ReleaseID=992005