#Genotype Specification Language (GSL)

Building GSL

• get the dotnet sdk 7.0 installed
• ./build.sh (recommend bash shell on windows)
• compiler ends up in bin/Gslc/net7.0/Gslc.exe

Running GSL

$ bin/Gslc/net7.0/Gslc.exe --snapgene . foo examples/simple_fusion.gsl

$ bin/Gslc/net7.0/Gslc.exe --snapgene . foo examples/simple_fusion.gsl
// GSL core compiler version 0.5.0 (04b205)
Writing snapgene output to dir=. tag=foo path=.\foo.0.dna

Open up foo.0.dna with your favorite genbank viewer (e.g. snapgene )

Intro

This is the command line wrapper around the main GslCore library that implements the bulk of the compiler.

NOTE

This version builds against the public Dmx.GslCore library (vs the Amyris GslCore)

Overview

Amyris domain specification language for rapidly specifying genetic designs

Documentation in the repo is sparse currently, but you can find

• the scientific paper describing the language here http://pubs.acs.org/doi/abs/10.1021/acssynbio.5b00194
• GSL documentation as part of the Autodesk genetic constructor tool here https://geneticconstructor.readme.io/docs/genotype-specification-language
• the press release on the GSL / Autodesk collaboration here http://investors.amyris.com/releasedetail.cfm?ReleaseID=992005