install and config

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Isaac Overcast edited this page Dec 22, 2015 · 3 revisions

Install

Ensure binaries get copied to the python library bin directory, my setup.py didn't do it right.

Config

Ensure the binary paths are set properly, perhaps with assert(). If binary paths are bad it fails silently in weird ways.

Conda build from scratch

git clone ipyrad
Download miniconda for your platform
. ~/.bashrc (to get conda in your path)
conda install conda-build
cd ipyrad
conda build conda.recipe
???
Profit!

Recommended

My thought is that we recommend only installing ipyrad using pip or (preferably) conda, so that we can ensure that the proper version of IPython, pandas, etc. is installed with it. For now I have been using pip install -e . to install ipyrad in development mode with my conda packages.