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added missing tools in the header
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Andrea Bagnacani committed Apr 21, 2020
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Showing 1 changed file with 11 additions and 4 deletions.
15 changes: 11 additions & 4 deletions bs_pe_5a.yaml
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Expand Up @@ -5,10 +5,17 @@ title_default: 'BS-Seq analysis (paired-end reads)'
steps:
- title: '<b>Outline</b>'
element: '#masthead:visible'
content: 'In this tour we will infer genome-wide methylation rates in a CpG context.<br>
Here, we will leverage on two tools:<br>
- <b>Samtools</b>, to extract uniquely mapped and properly paired sequences from aligned input data and mark duplicons<br>
- <b>MethylDackel</b> to quantify the methylated reads of the provided CpG context file.'
content: 'In this tour we will infer genome-wide methylation rates in a CpG
context.<br>
Here, we will leverage on:<br>
- <b>Samtools</b>, to extract uniquely mapped and properly paired sequences
from aligned input data and mark duplicons<br>
- <b>MethylDackel</b>, to quantify the methylated reads of the provided CpG
context file.<br>
- <b>Bedtools</b>, to extract the CpG methylation of potential promoters and
calculate mean methylation levels<br>
- <b>Join</b>, to join files on a shared column of values<br>
- <b>AWK</b>, to parse and extract table columns depending on their values.'
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