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Removed mentions of GRID and fixed Org data tutorials #21

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91b15f6
Small initial push to set upstream origin
nbailey-digital-science Sep 9, 2025
43af457
Removed all mentions of GRID from notebooks and fixed broken code in …
nbailey-digital-science Sep 10, 2025
5c1aea2
Rebuilt HTML
nbailey-digital-science Sep 23, 2025
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2,443 changes: 1,131 additions & 1,312 deletions ...ooks/8-organizations/1-GRID-preview.ipynb → ...zations/1-Organization-data-preview.ipynb
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6,315 changes: 1,814 additions & 4,501 deletions cookbooks/8-organizations/2-Industry-Collaboration.ipynb
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318 changes: 152 additions & 166 deletions cookbooks/8-organizations/3-Organizations-Collaboration-Network.ipynb
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2,223 changes: 846 additions & 1,377 deletions cookbooks/8-organizations/4-International-collaboration-by-year.ipynb
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271 changes: 32 additions & 239 deletions ...pping-grid-ids-to-organization-data.ipynb → ...ganization-ids-to-organization-data.ipynb
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170 changes: 86 additions & 84 deletions cookbooks/8-organizations/6-organization-groups.ipynb
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4,122 changes: 2,033 additions & 2,089 deletions cookbooks/8-organizations/7-benchmarking-organizations.ipynb
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9 changes: 1 addition & 8 deletions cookbooks/8-organizations/file_name.csv
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7,Boston,United States,Harvard Medical School,Massachusetts,grid.38142.3c,Harvard University,Cambridge,Massachusetts,United States,False,6252001,United States,US,6254926,Massachusetts,US-MA,4931972,Cambridge
8,Kent,United States,Kent State University,Ohio,grid.258518.3,Kent State University,Kent,Ohio,United States,False,6252001,United States,US,5165418,Ohio,US-OH,5159537,Kent
9,New York,United States,New York University,New York,grid.137628.9,New York University,New York,New York,United States,False,6252001,United States,US,5128638,New York,US-NY,5128581,New York City
10,null,United States,Mayo Clinic,null,grid.417468.8,Mayo Clinic,Scottsdale,Arizona,United States,True,6252001,United States,US,5551752,Arizona,US-AZ,5313457,Scottsdale
11,null,United States,Mayo Clinic,null,grid.417468.8,Mayo Clinic,Scottsdale,Arizona,United States,True,6252001,United States,US,5551752,Arizona,US-AZ,4160021,Jacksonville
12,null,United States,Mayo Clinic,null,grid.417468.8,Mayo Clinic,Scottsdale,Arizona,United States,True,6252001,United States,US,4155751,Florida,US-FL,5313457,Scottsdale
13,null,United States,Mayo Clinic,null,grid.417468.8,Mayo Clinic,Scottsdale,Arizona,United States,True,6252001,United States,US,4155751,Florida,US-FL,4160021,Jacksonville
14,null,United States,Mayo Clinic,null,grid.417467.7,Mayo Clinic,Jacksonville,Florida,United States,True,6252001,United States,US,5551752,Arizona,US-AZ,5313457,Scottsdale
15,null,United States,Mayo Clinic,null,grid.417467.7,Mayo Clinic,Jacksonville,Florida,United States,True,6252001,United States,US,5551752,Arizona,US-AZ,4160021,Jacksonville
16,null,United States,Mayo Clinic,null,grid.417467.7,Mayo Clinic,Jacksonville,Florida,United States,True,6252001,United States,US,4155751,Florida,US-FL,5313457,Scottsdale
17,null,United States,Mayo Clinic,null,grid.417467.7,Mayo Clinic,Jacksonville,Florida,United States,True,6252001,United States,US,4155751,Florida,US-FL,4160021,Jacksonville
10,null,United States,Mayo Clinic,null,grid.417468.8,Mayo Clinic,Scottsdale,Arizona,United States,False,6252001,United States,US,5551752,Arizona,US-AZ,5313457,Scottsdale
68 changes: 33 additions & 35 deletions cookbooks/8-organizations/network_grid.412125.1.html
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14 changes: 5 additions & 9 deletions cookbooks/8-organizations/network_grid.412125.1_Government.html
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Expand Up @@ -267,8 +267,6 @@ <h1></h1>

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// parsing and collecting nodes and edges from the python
nodes = new vis.DataSet([{"borderWidthSelected": 5, "color": "rgb(0, 147, 146)", "id": "grid.412125.1", "label": "King Abdulaziz University", "shape": "dot", "title": "\u003ch4\u003eKing Abdulaziz University\u003cbr\u003eJeddah, Saudi Arabia\u003cbr\u003e - grid.412125.1\u003c/h4\u003eLinks:\u003cli\u003eAustralian Nuclear Science and Technology Organisation\u003c/li\u003e\u003cli\u003eJapan Atomic Energy Agency\u003c/li\u003e\u003cli\u003eCouncil for Scientific and Industrial Research\u003c/li\u003e\u003cli\u003eChinese Academy of Sciences\u003c/li\u003e\u003cli\u003eScience and Technology Facilities Council", "value": 3}, {"borderWidthSelected": 5, "color": "rgb(156, 203, 134)", "id": "grid.7327.1", "label": "Council for Scientific and Industrial Research", "shape": "dot", "title": "\u003ch4\u003eCouncil for Scientific and Industrial Research\u003cbr\u003ePretoria, South Africa\u003cbr\u003e - grid.7327.1\u003c/h4\u003eLinks:\u003cli\u003eDepartment of Science and Technology\u003c/li\u003e\u003cli\u003eNational Research Foundation\u003c/li\u003e\u003cli\u003eSouth African Medical Research Council\u003c/li\u003e\u003cli\u003eKing Abdulaziz University", "value": 2}, {"borderWidthSelected": 5, "color": "rgb(156, 203, 134)", "id": "grid.9227.e", "label": "Chinese Academy of Sciences", "shape": "dot", "title": "\u003ch4\u003eChinese Academy of Sciences\u003cbr\u003eBeijing, China\u003cbr\u003e - grid.9227.e\u003c/h4\u003eLinks:\u003cli\u003eKing Abdulaziz University", "value": 2}, {"borderWidthSelected": 5, "color": "rgb(156, 203, 134)", "id": "grid.20256.33", "label": "Japan Atomic Energy Agency", "shape": "dot", "title": "\u003ch4\u003eJapan Atomic Energy Agency\u003cbr\u003eT\u014dkai-mura, Japan\u003cbr\u003e - grid.20256.33\u003c/h4\u003eLinks:\u003cli\u003eNational Institute of Advanced Industrial Science and Technology\u003c/li\u003e\u003cli\u003eKing Abdulaziz University\u003c/li\u003e\u003cli\u003eJapan Science and Technology Agency", "value": 2}, {"borderWidthSelected": 5, "color": "rgb(156, 203, 134)", "id": "grid.1089.0", "label": "Australian Nuclear Science and Technology Organisation", "shape": "dot", "title": "\u003ch4\u003eAustralian Nuclear Science and Technology Organisation\u003cbr\u003eSydney, Australia\u003cbr\u003e - grid.1089.0\u003c/h4\u003eLinks:\u003cli\u003eCommonwealth Scientific and Industrial Research Organisation\u003c/li\u003e\u003cli\u003eNational Institute of Standards and Technology\u003c/li\u003e\u003cli\u003eKing Abdulaziz University\u003c/li\u003e\u003cli\u003eJapan Science and Technology Agency", "value": 2}, {"borderWidthSelected": 5, "color": "rgb(156, 203, 134)", "id": "grid.14467.30", "label": "Science and Technology Facilities Council", "shape": "dot", "title": "\u003ch4\u003eScience and Technology Facilities Council\u003cbr\u003eSwindon, United Kingdom\u003cbr\u003e - grid.14467.30\u003c/h4\u003eLinks:\u003cli\u003eKing Abdulaziz University", "value": 2}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.424109.a", "label": "Department of Science and Technology", "shape": "dot", "title": "\u003ch4\u003eDepartment of Science and Technology\u003cbr\u003ePretoria, South Africa\u003cbr\u003e - grid.424109.a\u003c/h4\u003eLinks:\u003cli\u003eCouncil for Scientific and Industrial Research", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.425534.1", "label": "National Research Foundation", "shape": "dot", "title": "\u003ch4\u003eNational Research Foundation\u003cbr\u003ePretoria, South Africa\u003cbr\u003e - grid.425534.1\u003c/h4\u003eLinks:\u003cli\u003eCouncil for Scientific and Industrial Research", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.415021.3", "label": "South African Medical Research Council", "shape": "dot", "title": "\u003ch4\u003eSouth African Medical Research Council\u003cbr\u003eCape Town, South Africa\u003cbr\u003e - grid.415021.3\u003c/h4\u003eLinks:\u003cli\u003eCouncil for Scientific and Industrial Research", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.208504.b", "label": "National Institute of Advanced Industrial Science and Technology", "shape": "dot", "title": "\u003ch4\u003eNational Institute of Advanced Industrial Science and Technology\u003cbr\u003eTsukuba, Japan\u003cbr\u003e - grid.208504.b\u003c/h4\u003eLinks:\u003cli\u003eJapan Atomic Energy Agency", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.419082.6", "label": "Japan Science and Technology Agency", "shape": "dot", "title": "\u003ch4\u003eJapan Science and Technology Agency\u003cbr\u003eTokyo, Japan\u003cbr\u003e - grid.419082.6\u003c/h4\u003eLinks:\u003cli\u003eJapan Atomic Energy Agency\u003c/li\u003e\u003cli\u003eAustralian Nuclear Science and Technology Organisation", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.94225.38", "label": "National Institute of Standards and Technology", "shape": "dot", "title": "\u003ch4\u003eNational Institute of Standards and Technology\u003cbr\u003eGaithersburg, United States\u003cbr\u003e - grid.94225.38\u003c/h4\u003eLinks:\u003cli\u003eAustralian Nuclear Science and Technology Organisation", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.1016.6", "label": "Commonwealth Scientific and Industrial Research Organisation", "shape": "dot", "title": "\u003ch4\u003eCommonwealth Scientific and Industrial Research Organisation\u003cbr\u003eCanberra, Australia\u003cbr\u003e - grid.1016.6\u003c/h4\u003eLinks:\u003cli\u003eAustralian Nuclear Science and Technology Organisation", "value": 1}]);
edges = new vis.DataSet([{"arrows": "none", "from": "grid.412125.1", "label": 4, "to": "grid.7327.1", "value": 0.16}, {"arrows": "none", "from": "grid.412125.1", "label": 3, "to": "grid.9227.e", "value": 0.12}, {"arrows": "none", "from": "grid.412125.1", "label": 2, "to": "grid.20256.33", "value": 0.08}, {"arrows": "none", "from": "grid.412125.1", "label": 1, "to": "grid.1089.0", "value": 0.04}, {"arrows": "none", "from": "grid.412125.1", "label": 1, "to": "grid.14467.30", "value": 0.04}, {"arrows": "none", "from": "grid.7327.1", "label": 3, "to": "grid.424109.a", "value": 0.12}, {"arrows": "none", "from": "grid.7327.1", "label": 3, "to": "grid.425534.1", "value": 0.12}, {"arrows": "none", "from": "grid.7327.1", "label": 2, "to": "grid.415021.3", "value": 0.08}, {"arrows": "none", "from": "grid.20256.33", "label": 25, "to": "grid.208504.b", "value": 1.0}, {"arrows": "none", "from": "grid.20256.33", "label": 24, "to": "grid.419082.6", "value": 0.96}, {"arrows": "none", "from": "grid.1089.0", "label": 6, "to": "grid.94225.38", "value": 0.24}, {"arrows": "none", "from": "grid.1089.0", "label": 4, "to": "grid.1016.6", "value": 0.16}, {"arrows": "none", "from": "grid.1089.0", "label": 3, "to": "grid.419082.6", "value": 0.12}]);
nodes = new vis.DataSet([{"borderWidthSelected": 5, "color": "rgb(0, 147, 146)", "id": "grid.412125.1", "label": "King Abdulaziz University", "shape": "dot", "title": "\u003ch4\u003eKing Abdulaziz University\u003cbr\u003eJeddah, Saudi Arabia\u003cbr\u003e - grid.412125.1\u003c/h4\u003eLinks:\u003cli\u003eCouncil for Scientific and Industrial Research\u003c/li\u003e\u003cli\u003eAustralian Nuclear Science and Technology Organisation\u003c/li\u003e\u003cli\u003eChinese Academy of Sciences\u003c/li\u003e\u003cli\u003eScience and Technology Facilities Council", "value": 3}, {"borderWidthSelected": 5, "color": "rgb(156, 203, 134)", "id": "grid.7327.1", "label": "Council for Scientific and Industrial Research", "shape": "dot", "title": "\u003ch4\u003eCouncil for Scientific and Industrial Research\u003cbr\u003ePretoria, South Africa\u003cbr\u003e - grid.7327.1\u003c/h4\u003eLinks:\u003cli\u003eNational Research Foundation\u003c/li\u003e\u003cli\u003eDepartment of Science and Innovation\u003c/li\u003e\u003cli\u003eKing Abdulaziz University", "value": 2}, {"borderWidthSelected": 5, "color": "rgb(156, 203, 134)", "id": "grid.9227.e", "label": "Chinese Academy of Sciences", "shape": "dot", "title": "\u003ch4\u003eChinese Academy of Sciences\u003cbr\u003eBeijing, China\u003cbr\u003e - grid.9227.e\u003c/h4\u003eLinks:\u003cli\u003eKing Abdulaziz University", "value": 2}, {"borderWidthSelected": 5, "color": "rgb(156, 203, 134)", "id": "grid.1089.0", "label": "Australian Nuclear Science and Technology Organisation", "shape": "dot", "title": "\u003ch4\u003eAustralian Nuclear Science and Technology Organisation\u003cbr\u003eSydney, Australia\u003cbr\u003e - grid.1089.0\u003c/h4\u003eLinks:\u003cli\u003eJapan Science and Technology Agency\u003c/li\u003e\u003cli\u003eNational Institute of Standards and Technology\u003c/li\u003e\u003cli\u003eCommonwealth Scientific and Industrial Research Organisation\u003c/li\u003e\u003cli\u003eKing Abdulaziz University", "value": 2}, {"borderWidthSelected": 5, "color": "rgb(156, 203, 134)", "id": "grid.14467.30", "label": "Science and Technology Facilities Council", "shape": "dot", "title": "\u003ch4\u003eScience and Technology Facilities Council\u003cbr\u003eSwindon, United Kingdom\u003cbr\u003e - grid.14467.30\u003c/h4\u003eLinks:\u003cli\u003eCommissariat \u00e0 l\u0027\u00c9nergie Atomique et Aux \u00c9nergies Alternatives\u003c/li\u003e\u003cli\u003eKing Abdulaziz University", "value": 2}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.424109.a", "label": "Department of Science and Innovation", "shape": "dot", "title": "\u003ch4\u003eDepartment of Science and Innovation\u003cbr\u003ePretoria, South Africa\u003cbr\u003e - grid.424109.a\u003c/h4\u003eLinks:\u003cli\u003eCouncil for Scientific and Industrial Research", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.425534.1", "label": "National Research Foundation", "shape": "dot", "title": "\u003ch4\u003eNational Research Foundation\u003cbr\u003ePretoria, South Africa\u003cbr\u003e - grid.425534.1\u003c/h4\u003eLinks:\u003cli\u003eCouncil for Scientific and Industrial Research", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.94225.38", "label": "National Institute of Standards and Technology", "shape": "dot", "title": "\u003ch4\u003eNational Institute of Standards and Technology\u003cbr\u003eGaithersburg, United States\u003cbr\u003e - grid.94225.38\u003c/h4\u003eLinks:\u003cli\u003eAustralian Nuclear Science and Technology Organisation", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.1016.6", "label": "Commonwealth Scientific and Industrial Research Organisation", "shape": "dot", "title": "\u003ch4\u003eCommonwealth Scientific and Industrial Research Organisation\u003cbr\u003eCanberra, Australia\u003cbr\u003e - grid.1016.6\u003c/h4\u003eLinks:\u003cli\u003eAustralian Nuclear Science and Technology Organisation", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.419082.6", "label": "Japan Science and Technology Agency", "shape": "dot", "title": "\u003ch4\u003eJapan Science and Technology Agency\u003cbr\u003eTokyo, Japan\u003cbr\u003e - grid.419082.6\u003c/h4\u003eLinks:\u003cli\u003eAustralian Nuclear Science and Technology Organisation", "value": 1}, {"borderWidthSelected": 5, "color": "rgb(238, 180, 121)", "id": "grid.5583.b", "label": "Commissariat \u00e0 l\u0027\u00c9nergie Atomique et Aux \u00c9nergies Alternatives", "shape": "dot", "title": "\u003ch4\u003eCommissariat \u00e0 l\u0027\u00c9nergie Atomique et Aux \u00c9nergies Alternatives\u003cbr\u003eParis, France\u003cbr\u003e - grid.5583.b\u003c/h4\u003eLinks:\u003cli\u003eScience and Technology Facilities Council", "value": 1}]);
edges = new vis.DataSet([{"arrows": "none", "from": "grid.412125.1", "label": 4, "to": "grid.7327.1", "value": 0.5714285714285714}, {"arrows": "none", "from": "grid.412125.1", "label": 3, "to": "grid.9227.e", "value": 0.42857142857142855}, {"arrows": "none", "from": "grid.412125.1", "label": 1, "to": "grid.1089.0", "value": 0.14285714285714285}, {"arrows": "none", "from": "grid.412125.1", "label": 1, "to": "grid.14467.30", "value": 0.14285714285714285}, {"arrows": "none", "from": "grid.7327.1", "label": 4, "to": "grid.424109.a", "value": 0.5714285714285714}, {"arrows": "none", "from": "grid.7327.1", "label": 3, "to": "grid.425534.1", "value": 0.42857142857142855}, {"arrows": "none", "from": "grid.1089.0", "label": 7, "to": "grid.94225.38", "value": 1.0}, {"arrows": "none", "from": "grid.1089.0", "label": 4, "to": "grid.1016.6", "value": 0.5714285714285714}, {"arrows": "none", "from": "grid.1089.0", "label": 3, "to": "grid.419082.6", "value": 0.42857142857142855}, {"arrows": "none", "from": "grid.14467.30", "label": 1, "to": "grid.5583.b", "value": 0.14285714285714285}]);

nodeColors = {};
allNodes = nodes.get({ returnType: "Object" });
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