CVMFS

Install and configure CernVM-FS (CVMFS), particularly for Galaxy servers.

Requirements

On Enterprise Linux (ansible_os_family == "RedHat"), it is assumed that you have enabled Extra Packages for Enterprise Linux (EPEL) for CVMFS's dependencies. If you need to enable EPEL, geerlingguy.repo-epel can easily do this for you.

Role Variables

All variables are optional. However, if unset, the role will essentially do nothing. See the defaults and example playbook for examples.

Galaxy Client

Other than cvmfs_role as described below, Galaxy administrators will most likely only need to set the galaxy_cvmfs_repos_enabled variable (disabled by default), which automatically configures the CVMFS client for galaxyproject.org CVMFS repositories.

The value of galaxy_cvmfs_repos_enabled can be either config-repo or any value that evaluates to true (or false to explcititly disable, although this is the default). Using config-repo is recommended since it causes the role to only install a minimal configuration needed to mount the cvmfs-config.galaxyproject.org CVMFS repository, and then uses CVMFS' Config Repository support to obtain the configs for the other galaxyproject.org CVMFS repositories. This ensures you will always have up-to-date configs for all galaxyproject.org CVMFS repositories.

Setting galaxy_cvmfs_repos_enabled to config-repo overrides the value of cvmfs_config_repo since there can be only one default config repo configured on the client.

Setting galaxy_cvmfs_repos_enabled to any other truthy value will causes the role to create a static configuration where the full configurations for each galaxyproject.org CVMFS repository is installed on the target host. This option is retained for legacy purposes.

You can override the defaults for Galaxy's cvmfs_keys, cvmfs_server_urls, and cvmfs_repositories by prepending galaxy_ to the variable names. See the defaults for details.

If galaxy_cvmfs_repos_enabled is not set, full configuration of non-Galaxy repositories can be performed using the set of variables described below.

Client or shared client/server variables

variable	type	description
cvmfs_role	string	Type of CVMFS host: client, stratum0, stratum1, or localproxy. Alternatively, you may put hosts in to groups cvmfsclients, cvmfsstratum0servers, cvmfsstratum1servers, and cvmfslocalproxies. Controls what packages are installed and what configuration is performed.
cvmfs_keys	list of dicts	Keys to install on hosts of all types.
cvmfs_server_urls	list of dicts	CVMFS server URLs, the value of CVMFS_SERVER_URL in /etc/cvmfs/domain.d/<domain>.conf.
cvmfs_repositories	list of dicts	CVMFS repository configurations, the value of CVMFS_REPOSITORIES in /etc/cvmfs/default.local plus additional settings in /etc/cvmfs/repositories.d/<repository>/{client,server}.conf.
cvmfs_config_repo	dict	CVMFS Configuration Repository configuration, see the value of galaxy_cvmfs_config_repo in the defaults for syntax.
cvmfs_quota_limit	integer in MB	Size of CVMFS client cache. Default is 4000.
cvmfs_upgrade_client	boolean	Upgrade CVMFS on clients to the latest version if it is already installed. Default is false.
cvmfs_preload_install	boolean	Install the cvmfs_preload script for preloading the CVMFS cache.
cvmfs_preload_path	path	Directory where cvmfs_preload should be installed
cvmfs_install_setuid_cvmfs_wipecache	boolean	Install a setuid binary on clients that allows unprivileged users to perform cvmfs_config wipecache. EL only (source is provided).
cvmfs_install_setuid_cvmfs_remount_sync	boolean	Install a setuid binary on clients that allows unprivileged users to perform cvmfs_talk remount sync. EL only (source is provided).

The complex (list of dict) variables have the following syntaxes:

cvmfs_keys:
  - path: 'absolute path to repo key.pub'
    owner: 'user owning key file (default: root)'
    key: |
      -----BEGIN PUBLIC KEY-----
      MIIBIjAN...

cvmfs_server_urls:
  - domain: 'repo parent domain'
    urls:
      - 'repository URL'

cvmfs_repositories:
  - repository: 'repo name'
    stratum0: 'stratum 0 hostname'
    owner: 'user owning repository (default: root)'
    key_dir: 'path to directory containing repo keys (default: /etc/cvmfs/keys)'
    server_options:
      - KEY=val
    client_options:
      - KEY=val

Server variables

variable	type	description
cvmfs_private_keys	list of dicts	Keys to install on Stratum 0 hosts. Separate from cvmfs_keys for vaultability and avoiding duplication.
cvmfs_config_apache	boolean	Configure Apache on Stratum 0 and 1 servers. If disabled, you must configure it yourself. Default is true.
cvmfs_manage_firewall	boolean	Attempt to configure firewalld (EL) or ufw (Debian) to permit traffic to configured ports. Default is false.
cvmfs_squid_conf_src	path	Path to template Squid configuration file (for Stratum 1 and local proxy servers). Defaults are in the role templates/ directory.
cvmfs_stratum0_http_ports	list of integers	Port(s) to configure Apache on Stratum 0 servers to listen on. Default is 80.
cvmfs_stratum1_http_ports	list of integers	Port(s) to configure Squid on Stratum 1 servers to listen on. Default is 80 and 8000.
cvmfs_stratum1_apache_port	integer	Port to configure Apache on Stratum 1 servers to listen on. Default is 8008.
cvmfs_stratum1_cache_mem	integer in MB	Amount of memory for Squid to use for caching. Default is 128.
cvmfs_stratum1_cache_dir	list of dicts
cvmfs_localproxy_http_ports	list of integers	Port(s) to configure Squid on local proxy servers to listen on. Default is 3128.
cvmfs_upgrade_server	boolean	Upgrade CVMFS on servers to the latest version if it is already installed. Default is false.
cvmfs_srv_device	path	Block device to create a filesystem on and mount for CVMFS data. Unset by default.
cvmfs_srv_fstype	string	Filesystem to create on cvmfs_srv_device. Default is ext4.
cvmfs_srv_mount	path	Path to mount CVMFS data volume on. Default is /srv (but is ignored if cvmfs_srv_device is unset).
cvmfs_union_fs	string	Union filesystem type (overlayfs or aufs) for new repositories on Stratum 0 servers.
cvmfs_numfiles	integer	Set the maximum number of open files in /etc/security/limits.conf. Useful with the CVMFS_NFILES client option on Stratum 0 servers.

Dependencies

None.

Example Playbook

Configure all hosts as CVMFS clients with configurations for the Galaxy CVMFS repositories:

- name: CVMFS
  hosts: all
  vars:
    cvmfs_role: client
    galaxy_cvmfs_repos_enabled: config-repo
  roles:
    - geerlingguy.repo-epel
    - galaxyproject.cvmfs

Create a Stratum 1 (mirror) of the Galaxy CVMFS repositories and configure clients to prefer your Stratum 1 (assuming you have configured hosts in groups cvmfsclients and cvmfsstratum1servers):

- name: CVMFS
  hosts: cvmfsclients:cvmfsstratum1servers
  vars:
    cvmfs_srv_device: /dev/sdb
    galaxy_cvmfs_repos_enabled: true
    # override the default
    galaxy_cvmfs_server_urls:
      - domain: galaxyproject.org
        urls:
          - "http://cvmfs.example.org/cvmfs/@fqrn@"
          - "http://cvmfs1-psu0.galaxyproject.org/cvmfs/@fqrn@"
          - "http://cvmfs1-iu0.galaxyproject.org/cvmfs/@fqrn@"
          - "http://cvmfs1-tacc0.galaxyproject.org/cvmfs/@fqrn@"
          - "http://cvmfs1-mel0.gvl.org.au/cvmfs/@fqrn@"
          - "http://cvmfs1-ufr0.galaxyproject.eu/cvmfs/@fqrn@"
  roles:
    - galaxyproject.cvmfs

Create your own CVMFS infrastructure. Run once without keys (new keys will be generated on repo creation):

- name: CVMFS
  hosts: cvmfsstratum0servers
  vars:
    cvmfs_numfiles: 4096
    cvmfs_server_urls:
      - domain: example.org
        urls:
          - "http://cvmfs0.example.org/cvmfs/@fqrn@"
    cvmfs_repositories:
      - repository: foo.example.org
        stratum0: cvmfs0.example.org
        key_dir: /etc/cvmfs/keys/example.org
        server_options:
          - CVMFS_AUTO_TAG=false
          - CVMFS_GARBAGE_COLLECTION=true
          - CVMFS_AUTO_GC=false
        client_options:
          - CVMFS_NFILES=4096
      - repository: bar.example.org
        stratum0: cvmfs0.example.org
        key_dir: /etc/cvmfs/keys/example.org
  roles:
    - galaxyproject.cvmfs

Once keys have been created, add them to cvmfs_keys and run the same as above but hosts: all and cvmfs_keys defined as:

- name: CVMFS
  vars:
    cvmfs_keys:
      - path: /etc/cvmfs/keys/example.org/foo.example.org.pub
        key: |
          -----BEGIN PUBLIC KEY-----
          MIIBIjAN...
      - path: /etc/cvmfs/keys/example.org/bar.example.org.pub
        key: |
          -----BEGIN PUBLIC KEY-----
          MIIBIjAN...

License

MIT

Author Information

Nate Coraor Helena Rasche

View contributors on GitHub