Updating database NOT READY FOR REVIEW #1175
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… namespaces and addition of timestamp. need to test that queries work correctly
ntran18
commented
Feb 19, 2025
| gene_regulatory_network.gene WHERE (gene.gene_id ='${gene}' | ||
| OR gene.display_gene_id ='${gene}')`; | ||
| ${namespace} WHERE (gene.gene_id ='${gene}' | ||
| OR gene.display_gene_id ='${gene}') AND gene.time_stamp ='${timestamp}'`; |
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Old namespace doesn't have timestamp so this would cause error
| (LOWER(gene.gene_id)=LOWER('${geneProtein}') OR LOWER(gene.display_gene_id)=LOWER('${geneProtein}') | ||
| OR LOWER(protein.standard_name) =LOWER('${geneProtein}')) AND | ||
| LOWER(gene.gene_id) = LOWER(protein.gene_systematic_name);`; | ||
| ${namespace}.gene, ${namespace}.protein WHERE |
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Similar here, old namepsace doesn't have timestamp. Additionally, if we query from protein table, then we should check the timestamp from the protein table. If we query from gene table, then we should check the timestamp from the gene table.
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