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Remove Cori from documentation (ECP-WarpX#3939)
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* Remove Cori from documentation

* rder clusters in alphabetical order

* Update instructions to use mamba

* Apply suggestions from code review

* Apply suggestions from code review

* Cleanup: Formatting & Robustness

Improvements:
- easier future updates: clean out existing envs
- conda settings
- doc links
- remove outdated warning
- `conda deactivate` will fall back into `nersc-python` conda env,
  instead we can `exit` the SSH session to be done

Bugs:
- `echo`: needs `-e` for line breaks
- unpin `ipympl`
- helper script was not yet used in Jupyter kernel
- helper script lacked permissions
- `!mamba install -c conda-forge`: needs `-y` or will hang

Formatting:
- small text updates
- verbatim formatting
- slightly clearer namings

---------

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
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RemiLehe and ax3l authored Nov 3, 2023
1 parent 707e0bf commit 19c32f5
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2 changes: 1 addition & 1 deletion Docs/source/dataanalysis/formats.rst
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Expand Up @@ -19,7 +19,7 @@ When using the AMReX `plotfile` format, users can set the ``amrex.async_out=1``
option to perform the IO in a non-blocking fashion, meaning that the simulation
will continue to run while an IO thread controls writing the data to disk.
This can significantly reduce the overall time spent in IO. This is primarily intended for
large runs on supercomputers such as Summit and Cori; depending on the MPI
large runs on supercomputers (e.g. at OLCF or NERSC); depending on the MPI
implementation you are using, you may not see a benefit on your workstation.

When writing plotfiles, each rank will write to a separate file, up to some maximum number
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1 change: 0 additions & 1 deletion Docs/source/install/hpc.rst
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Expand Up @@ -33,7 +33,6 @@ This section documents quick-start guides for a selection of supercomputers that
:maxdepth: 1

hpc/adastra
hpc/cori
hpc/crusher
hpc/frontier
hpc/fugaku
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