Merge pull request #437 from RubD/suite

update fix extract_polygon_list
drieslab · Nov 21, 2022 · 0a9df62 · 0a9df62
2 parents 13e1301 + 62d5c63
commit 0a9df62
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/R/giotto_structures.R b/R/giotto_structures.R
@@ -656,21 +656,21 @@ extract_polygon_list = function(polygonlist,
 
     if(is.character(polyinfo)) {
 
-      parameters = c(name = name_polyinfo,
-                     maskfile = polyinfo,
+      parameters = c(list(name = name_polyinfo,
+                          maskfile = polyinfo),
                      polygon_mask_list_params)
       if(isTRUE(verbose)) print(parameters)
 
-      poly_results = do.call('createGiottoPolygonsFromMask', parameters)
+      poly_results = do.call(what = 'createGiottoPolygonsFromMask', args = parameters)
 
     } else if(inherits(polyinfo, 'data.frame')) {
 
-      parameters = c(name = name_polyinfo,
-                     maskfile = polyinfo,
+      parameters = c(list(name = name_polyinfo,
+                          segmdfr = polyinfo),
                      polygon_dfr_list_params)
       if(isTRUE(verbose)) print(parameters)
 
-      poly_results = do.call('createGiottoPolygonsFromDfr', parameters)
+      poly_results = do.call(what = 'createGiottoPolygonsFromDfr', args = parameters)
 
     } else if(inherits(polyinfo, 'giottoPolygon')) {