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fix: ":all:" passing for subsetGiotto #35

fix: ":all:" passing for subsetGiotto

fix: ":all:" passing for subsetGiotto #35

Triggered via push October 21, 2024 04:30
Status Failure
Total duration 29m 24s
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R-CMD-check.yaml

on: push
Matrix: R-CMD-check
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11 errors and 47 warnings
macos-latest (release)
Running examples in ‘GiottoClass-Ex.R’ failed
macos-latest (release)
Re-running with no redirection of stdout/stderr.
macos-latest (release)
Running examples in ‘GiottoClass-Ex.R’ failed
macos-latest (release)
Re-running with no redirection of stdout/stderr.
macos-latest (release)
Test failures
ubuntu-latest (release)
Process completed with exit code 1.
windows-latest (release)
Running examples in 'GiottoClass-Ex.R' failed
windows-latest (release)
Re-running with no redirection of stdout/stderr.
windows-latest (release)
Running examples in 'GiottoClass-Ex.R' failed
windows-latest (release)
Re-running with no redirection of stdout/stderr.
windows-latest (release)
Test failures
macos-latest (release)
Found the following significant warnings:
macos-latest (release)
Codoc mismatches from Rd file 'spat_binary_ops.Rd':
macos-latest (release)
Undocumented arguments in Rd file 'as.points.Rd'
macos-latest (release)
LaTeX errors when creating PDF version.
macos-latest (release)
See below...
macos-latest (release)
Codoc mismatches from Rd file 'spat_binary_ops.Rd':
macos-latest (release)
Undocumented arguments in Rd file 'as.points.Rd'
macos-latest (release)
LaTeX errors when creating PDF version.
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
macos-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘HDF5Array’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’
ubuntu-latest (release)
replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
windows-latest (release)
Found the following significant warnings:
windows-latest (release)
Codoc mismatches from Rd file 'spat_binary_ops.Rd':
windows-latest (release)
Undocumented arguments in Rd file 'as.points.Rd'
windows-latest (release)
LaTeX errors when creating PDF version.
windows-latest (release)
See below...
windows-latest (release)
Codoc mismatches from Rd file 'spat_binary_ops.Rd':
windows-latest (release)
Undocumented arguments in Rd file 'as.points.Rd'
windows-latest (release)
LaTeX errors when creating PDF version.
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4: